inc version

fix version on cpan

fix cd hit download directory

Merge pull request sanger-pathogens#343 from andrewjpage/core_paralogs

Optionally allow paralogs in core gene alignment

cmd for unique genes

inflation value short

allow for inflation factor for MCL to be changed

Merge pull request sanger-pathogens#306 from andrewjpage/blast_latest

Support latest version of blast

Merge pull request sanger-pathogens#280 from satta/spelling

fix spelling

dont add POD to end of R scripts