Stars
A conformal prediction framework implementing conformal risk control, providing statistically guaranteed prediction sets for any classifier.
Scripts to download genomes from the NCBI FTP servers
SIEVE is a bioinformatics filters-analysis pipeline for assembly, binning and annotation of metagenomes from EBI public database (database mining) or local user data.
How to package up a Snakemake workflow as a command-line tool
useful online resources and personal tips on snakemake
A collection of (mostly) technical things every software developer should know about
Fish shell like syntax highlighting for Zsh.
🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…
Fish-like autosuggestions for zsh
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.