Stars
non-redundant, compressed, journalled, file-based storage for biological sequences
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Your self-hosted, globally interconnected microblogging community
ProtonMail IMAP/SMTP Bridge Docker container
provides common tools and lookup tables used primarily by the hgvs and uta packages
[in development] Proof-of-Concept variation translation, validation, and registration service
GA4GH Variation Representation Python Implementation
Extensible specification for representing and uniquely identifying biological sequence variation
Pure-python implementation of UCSC liftOver genome coordinate conversion
marcone / teslausb
Forked from cimryan/teslausbA smart USB drive for Tesla Dashcam - extended storage, auto archive, web viewer
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
Collection of quick 'recipes' for common BioJava tasks
A workshop to discuss interconnection of PDB, Kaviar, PeptideAtlas, and TPP, for BD Spokes Planning Grant
Parse CellDesigner annotations from SBML.
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
💥 Algorithms that are built around BioJava and run on Apache Spark
The specification of the MMTF format for biological structures
The java implementation of the MMTF API, decoder and encoder.
mapping GEMs to PDBs for visualization on RCSB
supplemental material for a manuscript that is under review
Convert a MediaWiki export XML file into MarkDown as a series of git commits. Now on Codeberg.
Models and APIs for Genomic data. RETIRED 2018-01-24
Convenience tools for working with Apache Spark in the context of PDB data.
bedtools - the swiss army knife for genome arithmetic
🌈 Create color blind friendly color palettes in Java