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1. coseq coseq Public

   Co-Expression Analysis of Sequencing Data

   R 6 2

2. HTSFilter HTSFilter Public

   Filter replicated high-throughput transcriptome sequencing data

   R

3. EDGE-in-TCGA EDGE-in-TCGA Public

   Source code to reproduce results from "Exploring Drivers of Gene Expression in The Cancer Genome Atlas" by Rau et al. (2017)

   R 9 5

4. rosetta rosetta Public

   Regeneration Rosetta: An interactive R/Shiny app to explore regeneration-associated gene expression and chromatin accessibility

   R 2

5. maskmeans maskmeans Public

   Multi-view agglomeration/splitting K-means clustering algorithm

   R 3 1

6. padma padma Public

   Pathway deviation scores using multiple factor analysis

   R 3 1