The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

Common scripts

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Supplementary files for my book, "Bioinformatics Data Skills"

Emacs configuration for authors who research, write and publish articles, books and websites.

A fork of the simple terminal that supports the kitty graphics protocol

Dotfiles for my arch linux rice

My dotfiles (deployed by LARBS)