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alexiswl

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Commits on Oct 11, 2018

• Add quality to yield

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• Added y_count_to_human_readable function for non-yield plots

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• Moved back to lmplots, more functionality, set x_bins to 10

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• Reset indexes, now based on fastq time stamp, plots now use regplot with the np.mean estimator, fixed up a few other bugs

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Commits on Oct 10, 2018

• Ran through some more tests to get plots up and running

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• Renamed fastq dataframes

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• Configured seaborn packages

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• Committing changes made on commandline s.t they can be merged with kraken

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Commits on Jun 8, 2018

• Update minion_starter.py

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Commits on May 10, 2018

• Entrypoint and chdir data swapped in dockerfile

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• Delete DockerFile

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• Update Dockerfile

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• Update DockerFile

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  38b4458

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• Merge pull request #7 from alexiswl/yield_plot

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Commits on Apr 8, 2018

• Provided exception for deleted fast5 files of subfolders that already exist

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Commits on Mar 12, 2018

• Finished albacore slurm script for alpha promethion, plotting coming along

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Commits on Feb 28, 2018

• Merge branch 'yield_plot' of github.com:alexiswl/poreduck into yield_plot

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• Added if name = main line

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Commits on Feb 27, 2018

• Debugged slurm template and albacore script. Major changes made to pipeline

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Commits on Dec 14, 2017

• Completion now entirely on run class not subfolder class

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Commits on Dec 13, 2017

• Didn't change all of the tar.gz to fast5.tar.gz

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• In promethion pore duck, tar.gz changed to fast5.tar.gz

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Commits on Dec 12, 2017

• Added .fast5.tar.gz to clarify that these gzip files contain fast5 files.

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Commits on Dec 11, 2017

• Fixed bug that wouldn't allow last folder to be gzipped.

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Commits on Dec 8, 2017

• Added .tmp to tar.gz file so rsync doesn't snatch them whilst writing, promethion map works, looks like a few bugs around edges

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Commits on Dec 7, 2017

• much debugging needed, also works with corrupted files now. Definitely needs multithreading

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Commits on Dec 6, 2017

• Completed script for running the promethion. Need to now debug.

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Commits on Nov 14, 2017

• Git wrote log to change file, no idea why this happens.

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• Git wrote log to change file, no idea why this happens.

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Commits on Oct 4, 2017

• Added slurm templates

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Commits on Sep 15, 2017

• Update transfer_fast5_to_server.py

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Commits on Sep 14, 2017

• humanising y axis of yield by pore

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Commits on Sep 11, 2017

• Merge branch 'yield_plot' of http://github.com/alexiswl/poreduck into yield_plot

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• added linux checker, use agg if linux

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Commits on Sep 7, 2017

• Changed around logical in albacore_dir for 1Dsq analysis.

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