Stars
A Python toolkit for pathology image analysis algorithms.
Burn is a next generation Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.
Neural Networks: Zero to Hero
🔥🔥🔥AI-driven database tool and SQL client, The hottest GUI client, supporting MySQL, Oracle, PostgreSQL, DB2, SQL Server, DB2, SQLite, H2, ClickHouse, and more.
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Analysis pipelines for cancer genome sequencing in mice.
Tool for plotting sequencing data along genomic coordinates.
An R package for performing STAAR procedure in whole-genome sequencing studies
Wally: Visualization of aligned sequencing reads and contigs
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)
Nextflow pipeline dedicated to RiboMethSeq data processing
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Mutato is a toolkit for mutation analysis using DNA sequencing data
A list of Free Software network services and web applications which can be hosted on your own servers
Tools for working with genomic and high throughput sequencing data.
A repository of pipelines for single-cell data in Nextflow DSL2
Tools for plotting methylation data in various ways
Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
An extremely long review of R.
A list of interesting genome browser and genome visualization programs
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊