Repository for the code used to support GASP-1 overexpression study

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

Single-cell atlas of SCLC leveraging scRNA-seq, MIBI, and Vectra imaging, as part of the Human Tumor Atlas Network

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

A curated list of awesome Machine Learning frameworks, libraries and software.

😎 Awesome lists about all kinds of interesting topics

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep lear…

repository containing analysis scripts and auxiliary files

A collection of 50+ trajectory inference methods within a common interface 📥📤

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"

Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

Constraint-based metabolic modeling software from the Chandrasekaran Lab

This repository contains implementations and illustrative code to accompany DeepMind publications

TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

Deep soft K-means clustering with self-training for single cell RNA sequence data

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

A repository for sharing information on available COVID-19 RNA-Seq datasets

Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attention Networks" to appear in ACM Proceedings. <https://arxiv.o…

TensorFlow implementations of Graph Neural Networks

Sample Code for Gated Graph Neural Networks

DEEPScreen: Virtual Screening with Deep Convolutional Neural Networks Using Compound Images

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

scRNAseq analysis notes from Ming Tang

Evaluating the effect of technical sources of variability in large-scale gene expression compendia.