Repositories list

• enty

  Public
  lightweight ORM with a simple interface

  Python

  •

  GNU Lesser General Public License v2.1

  •2•0•0•0•Updated Jun 7, 2025Jun 7, 2025

• datajoint-python

  Public
  Relational data pipelines for the science lab

  Python

  •

  GNU Lesser General Public License v2.1

  •89•0•0•0•Updated May 22, 2025May 22, 2025

• container-images

  Public
  0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• mosaic-picasso

  Public
  Crosstalk removal for multiplex fluorescence imaging; Method for calculating and eliminating LBM cavity crosstalk

  Jupyter Notebook

  •3•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• pipeline

  Public
  Schemata and libraries for neuroscientific data

  Python

  •

  GNU Lesser General Public License v3.0

  •46•0•1•1•Updated Oct 28, 2024Oct 28, 2024

• PatchViewer

  Public
  Slice imaging program for patching

  LabVIEW

  •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• compress-multiphoton

  Public
  Utilities for compressing multiphoton calcium imaging movies and stacks

  Jupyter Notebook

  •

  Other

  •10•0•0•0•Updated Sep 14, 2023Sep 14, 2023

• neuropixel-pipeline

  Public
  Schemata and libraries for ingesting and clustering Neuropixel data

  Python

  •

  GNU General Public License v3.0

  •2•5•0•0•Updated Jun 27, 2023Jun 27, 2023

• PyMouse

  Public
  Behavioral conditioning with mice

  Python

  •6•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• scanreader

  Public
  Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

  tiffscanimagescanimage5+ 2scanimage2016bmultiroi

  Python

  •

  MIT License

  •15•11•4•1•Updated May 2, 2022May 2, 2022

• pytorch-docker

  Public
  Docker image for Pytorch

  Dockerfile

  •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022

• CaImAn

  Public
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

  Jupyter Notebook

  •

  GNU General Public License v2.0

  •386•1•0•0•Updated Sep 5, 2021Sep 5, 2021

• gpu-deploy

  Public
  Fabric library for Docker GPU deployment

  Python

  •3•0•0•0•Updated Jul 21, 2021Jul 21, 2021

• attorch

  Public
  PyTorch Utilities

  Python

  •

  MIT License

  •15•2•1•0•Updated Nov 16, 2020Nov 16, 2020

• mysql-admin-notes

  Public
  MySQL Administration Notes

  Python

  •2•0•0•0•Updated Oct 29, 2020Oct 29, 2020

• commons

  Public
  DataJoint schemas for neuroscience data

  MATLAB

  •28•1•0•1•Updated Oct 20, 2020Oct 20, 2020

• dbbak

  Public
  MySQL database backup scripting

  Shell

  •

  MIT License

  •5•1•0•0•Updated Oct 19, 2020Oct 19, 2020

• dbms

  Public
  mysql database managment utilities

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jun 8, 2020Jun 8, 2020

• nacllab

  Public
  Vagrant+ubuntu+salt+zabbix+mysql testbed for administrative testing

  SaltStack

  •0•0•0•0•Updated Jun 2, 2020Jun 2, 2020

• dy-thesis

  Public
  Dimitri Yatsenko's Thesis

  TeX

  •1•0•0•1•Updated May 7, 2019May 7, 2019

• zabbix-disk-performance

  Public
  Zabbix template for collecting IO statistics

  Python

  •

  MIT License

  •154•0•0•0•Updated Mar 22, 2019Mar 22, 2019

• docker

  Public
  Docker Files

  Dockerfile

  •3•0•0•0•Updated Feb 5, 2019Feb 5, 2019

• FPGAEyeTracker

  Public
  FPGA EyeTracker

  LabVIEW

  •3•5•2•0•Updated Feb 1, 2019Feb 1, 2019

• at-pyutils

  Public
  lab-wide python utilities

  2•0•0•0•Updated Oct 24, 2018Oct 24, 2018

• sessions

  Public
  Core DataJoint schemas for experimental sessions

  MATLAB

  •5•0•2•1•Updated Oct 11, 2018Oct 11, 2018

• percona-monitoring-plugins

  Public
  Percona Monitoring Plugins

  PHP

  •

  GNU General Public License v2.0

  •111•0•0•0•Updated Jun 7, 2018Jun 7, 2018

• zabbix-nvidia-smi-multi-gpu

  Public
  A zabbix template using nvidia-smi. Works with multiple GPUs on Windows and Linux.

  Batchfile

  •59•0•0•0•Updated Jun 5, 2018Jun 5, 2018

• datajoint-matlab

  Public
  High-level relational database interface for MATLAB

  MATLAB

  •

  MIT License

  •40•0•0•0•Updated Mar 2, 2018Mar 2, 2018

• matlab-utils

  Public
  Matlab utility code library

  MATLAB

  •2•1•0•0•Updated Oct 30, 2017Oct 30, 2017

• cov-est

  Public
  Covariance estimation library used in "Improved Estimation and Interpretation of Correlations in Neural Circuits."

  MATLAB

  •

  MIT License

  •4•4•3•0•Updated Oct 19, 2017Oct 19, 2017