Repositories list

• panacus

  Public
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

  graphgfapangenomics+ 3pangenomepangenome-graphpangenome-growth

  Rust

  •

  MIT License

  •10•113•18•0•Updated Oct 21, 2025Oct 21, 2025

• ml_helpers

  Public
  Rust

  •

  MIT License

  •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

• hprc-qc

  Public
  Perl

  •

  Apache License 2.0

  •1•0•0•0•Updated Oct 2, 2025Oct 2, 2025

• HySim

  Public
  Simulation pipeline simulating short single cell (10x Chromium) and long bulk (PacBio) reads from the same data

  Python

  •0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• trim-graph

  Public
  Simple tool to remove segments and links from GFA files that are not covered by paths

  Rust

  •

  MIT License

  •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

• sqz

  Public
  /ˈskuzi/

  gfapangenomicsbpe+ 1grammar-compression

  Rust

  •

  MIT License

  •0•10•0•0•Updated Aug 26, 2025Aug 26, 2025

• pqa

  Public
  Pangenome Quality Assessment

  Nextflow

  •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• codialab.github.io

  Public
  Group website of the CODIA lab

  SCSS

  •

  MIT License

  •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• GFAffix

  Public
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

  gfapangenomicshandlegraph

  Rust

  •

  MIT License

  •5•36•2•0•Updated May 29, 2025May 29, 2025

• .github

  Public
  0•0•0•0•Updated May 26, 2025May 26, 2025

• spp-dcj

  Public
  Python

  •

  MIT License

  •0•3•0•0•Updated Mar 6, 2025Mar 6, 2025