Repositories list

• configs

  Public
  Config files used to define parameters specific to compute environments at different Institutions

  Nextflow

  •

  MIT License

  •317•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• 2025-07-09-uab

  Public
  Workshop website for Git, Bash, and Python carpentry workshop hosted by U-BDS for July 9th, 2025 - July 10th, 2025

  HTML

  •

  Other

  •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

• scnanoseq_analysis

  Public
  nf-corescnanoseq

  R

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• bulk_RNA_seq_workshop

  Public
  Workshop materials for the U-BDS bulk RNA-seq lessons

  workshopbulk-rna-seq

  R

  •

  GNU General Public License v3.0

  •4•1•0•0•Updated May 28, 2025May 28, 2025

• scnanoseq

  Public
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore

  single-celloxford-nanoporenf-core

  Nextflow

  •

  MIT License

  •14•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• training_guides

  Public
  Compilation of training guides

  dockerrstudiosingularity+ 2data-analysisnf-core

  Shell

  •0•4•1•0•Updated Dec 20, 2024Dec 20, 2024

• 2024-07-09-uab

  Public
  0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• .github

  Public
  The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.

  1•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• 2024-03-18-uab

  Public template
  workshop

  HTML

  •

  Other

  •527•0•0•0•Updated Mar 14, 2024Mar 14, 2024

• git-novice

  Public
  Version Control with Git

  workshop

  Other

  •950•0•0•0•Updated Feb 5, 2024Feb 5, 2024

• test-datasets

  Public
  Test data to be used for automated testing with the nf-core pipelines

  nf-core

  MIT License

  •422•0•0•0•Updated Jan 11, 2024Jan 11, 2024

• 2023-12-14-uab

  Public
  A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.

  rworkshopswc+ 3software-carpentryuabubds

  HTML

  •

  Other

  •0•1•1•0•Updated Dec 15, 2023Dec 15, 2023

• zebrafish_telencephalon_atlas

  Public
  A R Shiny app of the transcriptome atlas of the maturing zebrafish telencephalon

  rshiny

  R

  •

  MIT License

  •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

• GbmPdxSTR

  Public
  Source code for the GbmPdxSTR app available at gliomamodels.com

  rshiny

  R

  •

  Other

  •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

• containers

  Public
  Bioinformatics containers

  Dockerfile

  •

  Apache License 2.0

  •254•0•0•0•Updated Feb 24, 2023Feb 24, 2023

• multi-package-containers

  Public
  Testing building mulled containers for multi-requirement tools.

  230•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• mulled

  Public
  Mulled - Automatized Containerized Software Repository

  38•0•0•0•Updated Feb 10, 2023Feb 10, 2023