Feat openemr 9035 9036 patient observations #10916
Workflow file for this run
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| ## | |
| # OpenEMR has two different kinds of tests: | |
| # - "Isolated tests": Tests that run without secondary services, a data layer or significant initialization requirements | |
| # - "Tests": Tests that require a database and initialization before they can run or pass. | |
| # This workflow runs the kind that requires initialization. | |
| name: Test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - rel-* | |
| pull_request: | |
| branches: | |
| - master | |
| - rel-* | |
| permissions: | |
| contents: read | |
| jobs: | |
| collect: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v5 | |
| - name: Collect Docker Dirs | |
| id: docker-dirs | |
| ## | |
| # Parse out the test parameters from the ci subdirectories that contain | |
| # docker-compose.yml files. We'll use that output as a test matrix | |
| # in github actions. | |
| run: | | |
| shopt -s nullglob | |
| dirs=( ci/*/docker-compose.yml ) | |
| # Remove compose-shared-* from the list | |
| filtered_dirs=() | |
| for dir in "${dirs[@]}"; do | |
| dirname=$(basename "$(dirname "$dir")") | |
| if [[ ! $dirname == compose-shared-* ]]; then | |
| filtered_dirs+=("$dir") | |
| fi | |
| done | |
| dirs=("${filtered_dirs[@]}") | |
| if (( "${#dirs[@]}" == 0 )); then | |
| echo 'No docker-compose.yml files found in ci subdirectories.' >&2 | |
| exit 1 | |
| fi | |
| node_version=22 | |
| # Avoid trying to save the cache in duplicate for every matrix element. | |
| declare -A seen_composer_cache_keys | |
| declare -A seen_npm_cache_keys | |
| dirs=( "${dirs[@]%/docker-compose.yml}" ) | |
| dirs=( "${dirs[@]#ci/}" ) | |
| # Everything inside this for loop that goes to stdout ends up | |
| # in the github output, so it must be valid json. | |
| for docker_dir in "${dirs[@]}"; do | |
| IFS=: read -r database db < <(yq '.services.mysql.image' "ci/${docker_dir}/docker-compose.yml") | |
| IFS=_ read -r webserver php _ <<< "${docker_dir}" | |
| # collect docker-compose.yml templates that will be used in the docker compose up merge | |
| selenium_template=$(yq '.x-includes.selenium-template' "ci/${docker_dir}/docker-compose.yml") | |
| webserver_template=$(yq '.x-includes.webserver-template' "ci/${docker_dir}/docker-compose.yml") | |
| database_template=$(yq '.x-includes.database-template' "ci/${docker_dir}/docker-compose.yml") | |
| # If docker_dir ends with "_no-e2e", we want to skip the e2e tests for this configuration. | |
| [[ $docker_dir = *_no-e2e ]] && e2e_enabled=false || e2e_enabled=true | |
| printf -v php '%d.%d' "${php::1}" "${php:1}" | |
| if [[ -z ${seen_composer_cache_keys[$php]} ]]; then | |
| seen_composer_cache_keys[$php]=true | |
| save_composer_cache=true | |
| else | |
| save_composer_cache=false | |
| fi | |
| if [[ -z ${seen_npm_cache_keys[$node_version]} ]]; then | |
| seen_npm_cache_keys[$node_version]=true | |
| save_node_cache=true | |
| else | |
| save_node_cache=false | |
| fi | |
| case "$webserver" in | |
| apache) | |
| openemr_dir=/var/www/localhost/htdocs/openemr | |
| ;; | |
| nginx) | |
| openemr_dir=/usr/share/nginx/html/openemr | |
| ;; | |
| *) | |
| echo "Unknown webserver: $webserver" >&2; | |
| exit 1 | |
| ;; | |
| esac | |
| # Determine if this job should save caches (only first job with each version) | |
| [[ $docker_dir = apache_84_114 ]] && save_cache=true || save_cache="false" | |
| printf '{ | |
| "database": "%s", | |
| "database_template": "%s", | |
| "db": "%s", | |
| "docker_dir": "%s", | |
| "e2e_enabled": "%s", | |
| "node_version": "%s", | |
| "openemr_dir": "%s", | |
| "php": "%s", | |
| "save_composer_cache": "%s", | |
| "save_node_cache": "%s", | |
| "selenium_template": "%s", | |
| "webserver": "%s", | |
| "webserver_template": "%s" | |
| }\n' "$database" \ | |
| "$database_template" \ | |
| "$db" \ | |
| "$docker_dir" \ | |
| "$e2e_enabled" \ | |
| "$node_version" \ | |
| "$openemr_dir" \ | |
| "$php" \ | |
| "$save_composer_cache" \ | |
| "$save_node_cache" \ | |
| "$selenium_template" \ | |
| "$webserver" \ | |
| "$webserver_template" | |
| done | { | |
| printf 'configurations=' | |
| jq -cs . | |
| } >> "$GITHUB_OUTPUT" | |
| outputs: | |
| configurations: ${{ steps.docker-dirs.outputs.configurations }} | |
| build: | |
| name: PHP ${{ matrix.configurations.php }} - ${{ matrix.configurations.webserver }} - ${{ matrix.configurations.database }} ${{ matrix.configurations.db }} | |
| runs-on: ubuntu-24.04 | |
| needs: collect | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| configurations: ${{ fromJson(needs.collect.outputs.configurations) }} | |
| env: | |
| DOCKER_DIR: ${{ matrix.configurations.docker_dir }} | |
| ENABLE_COVERAGE: ${{ matrix.configurations.docker_dir == 'apache_84_114' && 'true' || 'false' }} | |
| OPENEMR_DIR: ${{ matrix.configurations.openemr_dir }} | |
| # Note that the first entry in the COMPOSE_FILE needs to be in ci/ (if it has a subdirectory then it breaks things) | |
| COMPOSE_FILE: "ci/${{ matrix.configurations.webserver_template }}:ci/${{ matrix.configurations.database_template }}:ci/${{ matrix.configurations.selenium_template }}:ci/${{ matrix.configurations.docker_dir }}/docker-compose.yml" | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/checkout@v5 | |
| - name: Setup PHP | |
| uses: shivammathur/setup-php@v2 | |
| with: | |
| php-version: ${{ matrix.configurations.php }} | |
| - name: Report PHP Version | |
| run: php -v | |
| - name: Get composer cache directory | |
| id: composer-cache | |
| run: | | |
| { | |
| printf 'dir=' | |
| composer config cache-files-dir | |
| } >> $GITHUB_OUTPUT | |
| - name: Composer Cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ${{ steps.composer-cache.outputs.dir }} | |
| key: ${{ runner.os }}-composer-${{ matrix.configurations.php }}-${{ hashFiles('**/composer.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-composer-${{ matrix.configurations.php }}- | |
| ${{ runner.os }}-composer- | |
| - name: Install npm package | |
| uses: actions/setup-node@v5 | |
| with: | |
| node-version: ${{ matrix.configurations.node_version }} | |
| - name: Get NPM Cache Directory | |
| id: npm-cache-dir | |
| run: | | |
| { | |
| printf 'dir=' | |
| npm config get cache | |
| } >> "$GITHUB_OUTPUT" | |
| - name: Cache node modules | |
| # Use explicit restore and save actions to control | |
| # precisely when in the workflow the cache is | |
| # restored and saved. | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ${{ steps.npm-cache-dir.outputs.dir }} | |
| key: ${{ runner.os }}-node-${{ matrix.configurations.node_version }}-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node-${{ matrix.configurations.node_version }}- | |
| ${{ runner.os }}-node- | |
| - name: Main build | |
| run: | | |
| . ci/ciLibrary.source | |
| composer_github_auth | |
| main_build | |
| - name: CCDA build | |
| run: | | |
| . ci/ciLibrary.source | |
| ccda_build | |
| - name: Save node cache | |
| if: ${{ matrix.configurations.save_node_cache == 'true' }} | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ steps.npm-cache-dir.outputs.dir }} | |
| key: ${{ runner.os }}-node-${{ matrix.configurations.node_version }}-${{ hashFiles('**/package-lock.json') }} | |
| - name: Save composer cache | |
| if: ${{ matrix.configurations.save_composer_cache == 'true' }} | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ steps.composer-cache.outputs.dir }} | |
| key: ${{ runner.os }}-composer-${{ matrix.configurations.php }}-${{ hashFiles('**/composer.lock') }} | |
| - name: Docker Compose Config Output | |
| run: | | |
| . ci/ciLibrary.source | |
| dc config | |
| - name: Dockers environment start | |
| run: | | |
| . ci/ciLibrary.source | |
| dockers_env_start | |
| - name: Wait for MySQL to initialize | |
| if: ${{ matrix.configurations.database == 'mysql' }} | |
| run: | | |
| echo "Waiting 60 seconds for MySQL to initialize..." | |
| sleep 60 | |
| - name: Install and configure | |
| run: | | |
| . ci/ciLibrary.source | |
| install_configure | |
| - name: Prepare for coverage reporting | |
| if: ${{ env.ENABLE_COVERAGE == 'true' }} | |
| run: | | |
| . ci/ciLibrary.source | |
| configure_coverage | |
| - name: Unit testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test unit | |
| - name: Upload unit test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| ## | |
| # To skip E2E tests for specific docker directories, | |
| # rename the docker directory to end with "_no-e2e". | |
| - name: E2e testing | |
| if: ${{ (success() || failure()) && matrix.configurations.e2e_enabled == 'true' }} | |
| env: | |
| # Change this to just 'selenium' to disable video recording. | |
| COMPOSE_PROFILES: video-recording | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test e2e | |
| - name: Upload E2e test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Upload E2E test videos | |
| if: ${{ (success() || failure()) && matrix.configurations.e2e_enabled == 'true' && hashFiles('selenium-videos/video.mp4') != '' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: e2e-test-videos-${{ matrix.configurations.docker_dir }} | |
| path: selenium-videos/ | |
| - name: Api testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test api | |
| - name: Upload Api test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Fixtures testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test fixtures | |
| - name: Upload Fixtures test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Services testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test services | |
| - name: Upload Services test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Validators testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test validators | |
| - name: Upload Validators test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Controllers testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test controllers | |
| - name: Upload Controllers test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Common testing | |
| if: ${{ success() || failure() }} | |
| run: | | |
| . ci/ciLibrary.source | |
| build_test common | |
| - name: Upload Common test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Combine coverage | |
| if: ${{ env.ENABLE_COVERAGE == 'true' && (success() || failure()) }} | |
| run: | | |
| . ci/ciLibrary.source | |
| merge_coverage | |
| - name: Check if coverage files exist | |
| if: ${{ env.ENABLE_COVERAGE == 'true' && (success() || failure()) }} | |
| id: check-files | |
| run: | | |
| echo "clover_exists=$(test -f coverage.clover.xml && echo true || echo false)" >> $GITHUB_OUTPUT | |
| echo "htmlcov_exists=$(test -d ./htmlcov && echo true || echo false)" >> $GITHUB_OUTPUT | |
| - uses: actions/upload-artifact@v4 | |
| if: ${{ env.ENABLE_COVERAGE == 'true' && steps.check-files.outputs.clover_exists == 'true' && (success() || failure()) }} | |
| with: | |
| name: coverage.clover.xml | |
| path: coverage.clover.xml | |
| - uses: actions/upload-artifact@v4 | |
| if: ${{ env.ENABLE_COVERAGE == 'true' && steps.check-files.outputs.htmlcov_exists == 'true' && (success() || failure()) }} | |
| with: | |
| name: htmlcov | |
| path: ./htmlcov/ | |
| - name: Upload coverage reports to Codecov | |
| if: ${{ env.ENABLE_COVERAGE == 'true' && steps.check-files.outputs.clover_exists == 'true' && (success() || failure()) }} | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: coverage.clover.xml |