From 336f8b650566efe4a595e1a69dd73f4e769987a4 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Tue, 5 Aug 2025 11:52:16 +0200 Subject: [PATCH 1/2] Update nextflow.config from @vagkaratzas > Would it be too much pain to put a slash at the end of pipelines_testdata_base_path in tests/nextflow.config, in the next template update? Currently it's different to the modules_testdata_base_path above. Would be nice to have uniformity in tests throughout conf/ tests/ and modules-subworkflows tests. I've left a relevant though-comment on this PR: https://github.com/nf-core/methylseq/pull/558#discussion_r2253615940 --- nf_core/pipeline-template/tests/nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf_core/pipeline-template/tests/nextflow.config b/nf_core/pipeline-template/tests/nextflow.config index 8e7b90f0d5..f867b22761 100644 --- a/nf_core/pipeline-template/tests/nextflow.config +++ b/nf_core/pipeline-template/tests/nextflow.config @@ -8,7 +8,7 @@ // Or any resources requirements params { modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/' - pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/{{ short_name }}' + pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/{{ short_name }}/' } aws.client.anonymous = true // fixes S3 access issues on self-hosted runners From 92ab02c254d224a7388c57e35d219a27dbd4db36 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Tue, 5 Aug 2025 09:53:37 +0000 Subject: [PATCH 2/2] [automated] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index d0afbc759c..a5a1d26a18 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ### Template +- TEMPLATE - add trainling slash for pipelines_testdata_base_path ([#3701](https://github.com/nf-core/tools/pull/3701)) + ### Linting ### Modules