+
Skip to content

downgrade to nf-version 24.10.5 #3667

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Jul 8, 2025
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .github/snapshots/default.nf.test.snap
Original file line number Diff line number Diff line change
Expand Up @@ -107,7 +107,7 @@
],
"meta": {
"nf-test": "0.9.2",
"nextflow": "24.10.8"
"nextflow": "24.10.5"
},
"timestamp": "2025-05-07T13:29:04.284923"
}
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/create-lint-wf.yml
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ jobs:
strategy:
matrix:
NXF_VER:
- "24.10.8"
- "24.10.5"
- "latest-everything"
steps:
- name: go to subdirectory and change nextflow workdir
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/create-test-wf.yml
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ jobs:
strategy:
matrix:
NXF_VER:
- "24.10.8"
- "24.10.5"
- "latest-everything"
steps:
- name: go to working directory
Expand Down
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
- fix nf-test scope to ignore nf-core module/swf tests ([#3609](https://github.com/nf-core/tools/pull/3609))
- write github.run_id on pipeline template ([#3637](https://github.com/nf-core/tools/pull/3637))
- Bump nf-schema to `2.4.2` ([#3533](https://github.com/nf-core/tools/pull/3533))
- Bump the minimal Nextflow version to `24.10.8` ([#3533](https://github.com/nf-core/tools/pull/3533))
- Bump the minimal Nextflow version to `24.10.5` ([#3533](https://github.com/nf-core/tools/pull/3533), [#3667](https://github.com/nf-core/tools/pull/3667))
- CI - Only trigger nf-test action on pull_request ([#3628](https://github.com/nf-core/tools/pull/3628))
- Fix link to nf-test GHA in README.md ([#3630](https://github.com/nf-core/tools/pull/3630))
- Add accelerator directive for GPU-enabled processes ([#3632](https://github.com/nf-core/tools/pull/3632))
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/nf-test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ jobs:
- isMain: false
profile: "singularity"
NXF_VER:
- "24.10.8"
- "24.10.5"
- "latest-everything"
env:
NXF_ANSI_LOG: false
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)

[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.8-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
[![nf-core template version](https://img.shields.io/badge/nf--core_template-{{ nf_core_version }}-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/{{ nf_core_version }})
[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipeline-template/nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -297,7 +297,7 @@ manifest {
description = """{{ description }}"""
mainScript = 'main.nf'
defaultBranch = '{{ default_branch }}'
nextflowVersion = '!>=24.10.8'
nextflowVersion = '!>=24.10.5'
version = '{{ version }}'
doi = ''
}
Expand Down
2 changes: 1 addition & 1 deletion nf_core/pipelines/lint/readme.py
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ def readme(self):

if "nextflow_badge" not in ignore_configs:
# Check that there is a readme badge showing the minimum required version of Nextflow
# [![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.8-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
# [![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
# and that it has the correct version
nf_badge_re = r"\[!\[Nextflow\]\(https://img\.shields\.io/badge/version-!?(?:%E2%89%A5|%3E%3D)([\d\.]+)-green\?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow\.io\)\]\(https://www\.nextflow\.io/\)"
match = re.search(nf_badge_re, content)
Expand Down
点击 这是indexloc提供的php浏览器服务,不要输入任何密码和下载