From 2eefd7554df60705f3575df230e98133fecf3b0b Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 16 Jun 2025 13:50:10 +0200 Subject: [PATCH 1/3] remove more occurrences of NFT_diff --- nf_core/pipeline-template/.github/workflows/nf-test.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/nf_core/pipeline-template/.github/workflows/nf-test.yml b/nf_core/pipeline-template/.github/workflows/nf-test.yml index a56df853f0..6f698f503b 100644 --- a/nf_core/pipeline-template/.github/workflows/nf-test.yml +++ b/nf_core/pipeline-template/.github/workflows/nf-test.yml @@ -101,8 +101,6 @@ jobs: - name: Run nf-test uses: ./.github/actions/nf-test env: - NFT_DIFF: ${{ env.NFT_DIFF }} - NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }} NFT_WORKDIR: ${{ env.NFT_WORKDIR }} with: profile: ${{ matrix.profile }} From 736186583e5ec1ab92474715433305dd6de9c5d7 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Mon, 16 Jun 2025 11:53:38 +0000 Subject: [PATCH 2/3] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 486ff28cb2..c45f3a1901 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,6 +19,7 @@ ### General - Add conda cache dir ([#3610](https://github.com/nf-core/tools/pull/3610)) +- TEMPALTE: Remove more occurences of NFT_DIFF ([#3619](https://github.com/nf-core/tools/pull/3619)) ## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02] From 978799e0df7ece7e95d8c4f5e9795c7df5d55324 Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 16 Jun 2025 14:14:17 +0200 Subject: [PATCH 3/3] fix changelog --- CHANGELOG.md | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c45f3a1901..2b30e62241 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,7 +4,8 @@ ### Template -- Avoid overriding `NFT_DIFF` and `NFT_DIFF_ARGS` in `nf-test` action ([#3606](https://github.com/nf-core/tools/pull/3606)) +- Avoid overriding `NFT_DIFF` and `NFT_DIFF_ARGS` in `nf-test` action ([#3606](https://github.com/nf-core/tools/pull/3606)) and ([#3619](https://github.com/nf-core/tools/pull/3619)) +- fix nf-test scope to ignore nf-core module/swf tests ([#3609](https://github.com/nf-core/tools/pull/3609)) ### Linting @@ -12,14 +13,11 @@ ### Modules -- TEMPLATE: fix nf-test scope to ignore nf-core module/swf tests ([#3609](https://github.com/nf-core/tools/pull/3609)) - ### Subworkflows ### General - Add conda cache dir ([#3610](https://github.com/nf-core/tools/pull/3610)) -- TEMPALTE: Remove more occurences of NFT_DIFF ([#3619](https://github.com/nf-core/tools/pull/3619)) ## [v3.3.1 - Tungsten Tamarin Patch](https://github.com/nf-core/tools/releases/tag/3.3.1) - [2025-06-02]