diff --git a/.gitpod.yml b/.gitpod.yml index db31d01bed..d5948695bf 100644 --- a/.gitpod.yml +++ b/.gitpod.yml @@ -1,4 +1,4 @@ -image: nfcore/gitpod:latest +image: nfcore/gitpod:dev tasks: - name: install current state of nf-core/tools and setup pre-commit command: | diff --git a/nf_core/pipelines/lint/nf_test_content.py b/nf_core/pipelines/lint/nf_test_content.py index 09c3a7147f..44bd6062cc 100644 --- a/nf_core/pipelines/lint/nf_test_content.py +++ b/nf_core/pipelines/lint/nf_test_content.py @@ -141,6 +141,9 @@ def nf_test_content(self) -> Dict[str, List[str]]: "description": "`pipelines_testdata_base_path`", }, } + # Check if tests/nextflow.config is present + if not conf_fn.exists(): + failed.append(f"'{conf_fn.relative_to(self.wf_path)}' does not exist") if nf_test_content_conf is None or str(conf_fn.relative_to(self.wf_path)) not in nf_test_content_conf: checks_passed = {check: False for check in config_checks} diff --git a/setup.py b/setup.py index cfbcf96d8c..8f4d2fc5dd 100644 --- a/setup.py +++ b/setup.py @@ -2,7 +2,7 @@ from setuptools import find_packages, setup -version = "3.3.1" +version = "3.3.2dev" with open("README.md") as f: readme = f.read()