From 1dd7e1744bcffb26d5b93f4f853405fddd0c5993 Mon Sep 17 00:00:00 2001 From: Julian Flesch Date: Tue, 13 May 2025 19:01:36 +0200 Subject: [PATCH 1/4] Add wrapping long lines in list table --- nf_core/test_datasets/list.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/nf_core/test_datasets/list.py b/nf_core/test_datasets/list.py index b9dd48add4..8b48486ab3 100644 --- a/nf_core/test_datasets/list.py +++ b/nf_core/test_datasets/list.py @@ -73,11 +73,11 @@ def list_datasets( else: table = rich.table.Table() if generate_nf_path: - table.add_column("Nextflow Import") + table.add_column("Nextflow Import", overflow="fold") elif generate_dl_url: - table.add_column("Download URL") + table.add_column("Download URL", overflow="fold") else: - table.add_column("File") + table.add_column("File", overflow="fold") for el in out: table.add_row(el) From d83f13c188ff69a100857f2958c3c2cfc4359656 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Tue, 13 May 2025 17:17:04 +0000 Subject: [PATCH 2/4] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 96b5f01d4e..9c7d21cc17 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -77,6 +77,7 @@ - chore(deps): update python:3.12-slim docker digest to bae1a06 ([#3558](https://github.com/nf-core/tools/pull/3558)) - Update CI to test template pipelines with nf-test ([#3559](https://github.com/nf-core/tools/pull/3559)) - chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.11.9 ([#3563](https://github.com/nf-core/tools/pull/3563)) +- Add wrapping long lines in list table ([#3567](https://github.com/nf-core/tools/pull/3567)) ## [v3.2.1 - Pewter Pangolin Patch](https://github.com/nf-core/tools/releases/tag/3.2.1) - [2025-04-29] From 90b6e2e1f6626357f05e08e603a562cc5096d448 Mon Sep 17 00:00:00 2001 From: Julian Flesch Date: Tue, 13 May 2025 19:17:16 +0200 Subject: [PATCH 3/4] Add to test-datasets changes --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 96b5f01d4e..8d1b0fc9eb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -63,7 +63,7 @@ - Changing retrieval of file extension from EDAM ([#3512](https://github.com/nf-core/tools/pull/3512)) - Refactor adding EDAM ontologies and allowing detect more patterns (e.g., versions.yml) ([#3519](https://github.com/nf-core/tools/pull/3519)) - Add offline configs test action ([#3524](https://github.com/nf-core/tools/pull/3524)) -- Adds `test-datasets` subcommand for listing/searching files in the nf-core/test-datasets repo from the cli ([#3487](https://github.com/nf-core/tools/issues/3487), [#3548](https://github.com/nf-core/tools/pull/3548), [#3566](https://github.com/nf-core/tools/pull/3566)) +- Adds `test-datasets` subcommand for listing/searching files in the nf-core/test-datasets repo from the cli ([#3487](https://github.com/nf-core/tools/issues/3487), [#3548](https://github.com/nf-core/tools/pull/3548), [#3566](https://github.com/nf-core/tools/pull/3566), [#3566](https://github.com/nf-core/tools/pull/3567)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.11.2 ([#3521](https://github.com/nf-core/tools/pull/3521)) - Fix indentation in included_configs API docs ([#3523](https://github.com/nf-core/tools/pull/3523)) - chore(deps): update python:3.12-slim docker digest to a866731 ([#3527](https://github.com/nf-core/tools/pull/3527)) From a157b2a3ef627d19134f2c6181aee4c670bef371 Mon Sep 17 00:00:00 2001 From: Julian Flesch Date: Tue, 13 May 2025 19:18:11 +0200 Subject: [PATCH 4/4] Overwrite auto-changelog entry --- CHANGELOG.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3c806d5499..60afb1faab 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -63,7 +63,7 @@ - Changing retrieval of file extension from EDAM ([#3512](https://github.com/nf-core/tools/pull/3512)) - Refactor adding EDAM ontologies and allowing detect more patterns (e.g., versions.yml) ([#3519](https://github.com/nf-core/tools/pull/3519)) - Add offline configs test action ([#3524](https://github.com/nf-core/tools/pull/3524)) -- Adds `test-datasets` subcommand for listing/searching files in the nf-core/test-datasets repo from the cli ([#3487](https://github.com/nf-core/tools/issues/3487), [#3548](https://github.com/nf-core/tools/pull/3548), [#3566](https://github.com/nf-core/tools/pull/3566), [#3566](https://github.com/nf-core/tools/pull/3567)) +- Adds `test-datasets` subcommand for listing/searching files in the nf-core/test-datasets repo from the cli ([#3487](https://github.com/nf-core/tools/issues/3487), [#3548](https://github.com/nf-core/tools/pull/3548), [#3566](https://github.com/nf-core/tools/pull/3566), [#3567](https://github.com/nf-core/tools/pull/3567)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.11.2 ([#3521](https://github.com/nf-core/tools/pull/3521)) - Fix indentation in included_configs API docs ([#3523](https://github.com/nf-core/tools/pull/3523)) - chore(deps): update python:3.12-slim docker digest to a866731 ([#3527](https://github.com/nf-core/tools/pull/3527)) @@ -77,7 +77,6 @@ - chore(deps): update python:3.12-slim docker digest to bae1a06 ([#3558](https://github.com/nf-core/tools/pull/3558)) - Update CI to test template pipelines with nf-test ([#3559](https://github.com/nf-core/tools/pull/3559)) - chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.11.9 ([#3563](https://github.com/nf-core/tools/pull/3563)) -- Add wrapping long lines in list table ([#3567](https://github.com/nf-core/tools/pull/3567)) ## [v3.2.1 - Pewter Pangolin Patch](https://github.com/nf-core/tools/releases/tag/3.2.1) - [2025-04-29]