From 6f93c73bb2387193aa26b0ccea0999572ae377cf Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Wed, 26 Mar 2025 08:52:30 +0000 Subject: [PATCH 1/2] Update actions/setup-python digest to 8d9ed9a --- .github/workflows/changelog.yml | 4 ++-- .github/workflows/create-lint-wf.yml | 2 +- .github/workflows/create-test-lint-wf-template.yml | 2 +- .github/workflows/create-test-wf.yml | 2 +- .github/workflows/deploy-pypi.yml | 2 +- .github/workflows/fix-linting.yml | 2 +- .github/workflows/lint-code.yml | 2 +- .github/workflows/pytest.yml | 4 ++-- .github/workflows/sync.yml | 2 +- .github/workflows/update-textual-snapshots.yml | 2 +- nf_core/pipeline-template/.github/actions/nf-test/action.yml | 2 +- .../pipeline-template/.github/workflows/download_pipeline.yml | 2 +- nf_core/pipeline-template/.github/workflows/fix-linting.yml | 2 +- nf_core/pipeline-template/.github/workflows/linting.yml | 4 ++-- 14 files changed, 17 insertions(+), 17 deletions(-) diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml index d74272f7fb..694ffa12e0 100644 --- a/.github/workflows/changelog.yml +++ b/.github/workflows/changelog.yml @@ -36,7 +36,7 @@ jobs: fi gh pr checkout $PR_NUMBER - - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" @@ -65,7 +65,7 @@ jobs: echo "File changed: ${{ env.changed }}" - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" cache: "pip" diff --git a/.github/workflows/create-lint-wf.yml b/.github/workflows/create-lint-wf.yml index 5e3e26d44f..e8e35a0c40 100644 --- a/.github/workflows/create-lint-wf.yml +++ b/.github/workflows/create-lint-wf.yml @@ -51,7 +51,7 @@ jobs: # Set up nf-core/tools - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" cache: pip diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml index d534c2ad45..4bb6ebf47b 100644 --- a/.github/workflows/create-test-lint-wf-template.yml +++ b/.github/workflows/create-test-lint-wf-template.yml @@ -82,7 +82,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml index b4a5c167c1..f15fff6d38 100644 --- a/.github/workflows/create-test-wf.yml +++ b/.github/workflows/create-test-wf.yml @@ -50,7 +50,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/.github/workflows/deploy-pypi.yml b/.github/workflows/deploy-pypi.yml index 673b455855..6d259d9871 100644 --- a/.github/workflows/deploy-pypi.yml +++ b/.github/workflows/deploy-pypi.yml @@ -17,7 +17,7 @@ jobs: name: Check out source-code repository - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/.github/workflows/fix-linting.yml b/.github/workflows/fix-linting.yml index 5fc7c10df9..77552fbba4 100644 --- a/.github/workflows/fix-linting.yml +++ b/.github/workflows/fix-linting.yml @@ -32,7 +32,7 @@ jobs: GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} # Install and run pre-commit - - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/.github/workflows/lint-code.yml b/.github/workflows/lint-code.yml index 38dba9041a..04e6b14f09 100644 --- a/.github/workflows/lint-code.yml +++ b/.github/workflows/lint-code.yml @@ -21,7 +21,7 @@ jobs: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" cache: "pip" diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 07d2eafe93..a6b305d5a8 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -91,7 +91,7 @@ jobs: name: Check out source-code repository - name: Set up Python ${{ needs.setup.outputs.python-version }} - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: ${{ needs.setup.outputs.python-version }} cache: "pip" @@ -174,7 +174,7 @@ jobs: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 env: AGENT_TOOLSDIRECTORY: /opt/actions-runner/_work/tools/tools/ with: diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml index 0c8b471c18..83cf6f061f 100644 --- a/.github/workflows/sync.yml +++ b/.github/workflows/sync.yml @@ -79,7 +79,7 @@ jobs: fetch-depth: "0" - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/.github/workflows/update-textual-snapshots.yml b/.github/workflows/update-textual-snapshots.yml index 7a3f036a16..f09271b3b8 100644 --- a/.github/workflows/update-textual-snapshots.yml +++ b/.github/workflows/update-textual-snapshots.yml @@ -33,7 +33,7 @@ jobs: # Install dependencies and run pytest - name: Set up Python - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" cache: "pip" diff --git a/nf_core/pipeline-template/.github/actions/nf-test/action.yml b/nf_core/pipeline-template/.github/actions/nf-test/action.yml index ab56922c96..2ccf977829 100644 --- a/nf_core/pipeline-template/.github/actions/nf-test/action.yml +++ b/nf_core/pipeline-template/.github/actions/nf-test/action.yml @@ -25,7 +25,7 @@ runs: version: "{% raw %}${{ env.NXF_VERSION }}" - name: Set up Python - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.11" diff --git a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml index ca8774a9bc..c0dfc99db4 100644 --- a/nf_core/pipeline-template/.github/workflows/download_pipeline.yml +++ b/nf_core/pipeline-template/.github/workflows/download_pipeline.yml @@ -44,7 +44,7 @@ jobs: - name: Disk space cleanup uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 - - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" architecture: "x64" diff --git a/nf_core/pipeline-template/.github/workflows/fix-linting.yml b/nf_core/pipeline-template/.github/workflows/fix-linting.yml index c5ebfc6f73..6290e503a3 100644 --- a/nf_core/pipeline-template/.github/workflows/fix-linting.yml +++ b/nf_core/pipeline-template/.github/workflows/fix-linting.yml @@ -32,7 +32,7 @@ jobs: GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} # Install and run pre-commit - - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" diff --git a/nf_core/pipeline-template/.github/workflows/linting.yml b/nf_core/pipeline-template/.github/workflows/linting.yml index 565235fb03..7b87c01d05 100644 --- a/nf_core/pipeline-template/.github/workflows/linting.yml +++ b/nf_core/pipeline-template/.github/workflows/linting.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 - name: Set up Python 3.12 - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" @@ -33,7 +33,7 @@ jobs: - name: Install Nextflow uses: nf-core/setup-nextflow@v2 - - uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5 + - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5 with: python-version: "3.13" architecture: "x64" From 06236e500916d31a632b2180024da1b2a9eeec8b Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Thu, 27 Mar 2025 10:33:52 +0000 Subject: [PATCH 2/2] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index fa4888b012..358ade078a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -52,6 +52,7 @@ - Ontology fix comment yaml ([#3502](https://github.com/nf-core/tools/pull/3502)) - Bugfix - add back logo to the README ([#3504](https://github.com/nf-core/tools/pull/3504)) - Update dead link ([#3505](https://github.com/nf-core/tools/pull/3505)) +- chore(deps): update actions/setup-python digest to 8d9ed9a ([#3518](https://github.com/nf-core/tools/pull/3518)) ## [v3.2.0 - Pewter Pangolin](https://github.com/nf-core/tools/releases/tag/3.2.0) - [2025-01-27]