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create .nextflow/nf-core if it doesn't exist #2312

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Merged
merged 2 commits into from
Jun 12, 2023
Merged

create .nextflow/nf-core if it doesn't exist #2312

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9379ef8
create .nextflow/nf-core if it doesn't exist
mirpedrol Jun 12, 2023
2c2e2d6
update changelog
mirpedrol Jun 12, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -32,6 +32,7 @@

- GitPod base image: Always self-update to the latest version of Nextflow. Add [pre-commit](https://pre-commit.com/) dependency.
- GitPod configs: Update Nextflow as an init task, init pre-commit in pipeline config.
- Refgenie: Create `nxf_home/nf-core/refgenie_genomes.config` path if it doesn't exist ([#2312](https://github.com/nf-core/tools/pull/2312))

# [v2.8 - Ruthenium Monkey](https://github.com/nf-core/tools/releases/tag/2.8) - [2023-04-27]

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2 changes: 1 addition & 1 deletion nf_core/refgenie.py
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Expand Up @@ -184,7 +184,7 @@ def update_config(rgc):

# Save the updated genome config
try:
with open(refgenie_genomes_config_file, "w") as fh:
with open(refgenie_genomes_config_file, "w+") as fh:
fh.write(refgenie_genomes)
log.info(f"Updated nf-core genomes config: {refgenie_genomes_config_file}")
except FileNotFoundError:
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