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Add nf-core create subworkflow #1835

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Merged
merged 22 commits into from
Oct 6, 2022

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mashehu
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@mashehu mashehu commented Sep 23, 2022

  • Adding subworkflow template
  • Adding nf-core subworkflows create command and tests

Should be ready to review+merge once the modules restructuring is complete :D

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codecov bot commented Sep 23, 2022

Codecov Report

Merging #1835 (9a6bb03) into subworkflows (8e56bd3) will decrease coverage by 0.08%.
The diff coverage is 51.85%.

@@               Coverage Diff                @@
##           subworkflows    #1835      +/-   ##
================================================
- Coverage         64.39%   64.31%   -0.09%     
================================================
  Files                35       35              
  Lines              4179     4206      +27     
================================================
+ Hits               2691     2705      +14     
- Misses             1488     1501      +13     
Impacted Files Coverage Δ
nf_core/__main__.py 53.41% <51.85%> (-0.10%) ⬇️

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@ggabernet ggabernet requested a review from mirpedrol September 30, 2022 09:18
@mirpedrol mirpedrol changed the base branch from dev to subworkflows October 6, 2022 12:37
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Merging this to subworkflows branch also to continue development there

@mirpedrol mirpedrol merged commit 8201134 into nf-core:subworkflows Oct 6, 2022
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