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add new command modules test#1526

Merged

mirpedrol merged 25 commits intonf-core:devfrom

mirpedrol:modules_test

May 2, 2022

Commits on Apr 25, 2022

add new command modules test
Júlia Mir Pedrol
committed

Commits on Apr 26, 2022

run tests with pytest
Júlia Mir Pedrol
committed
remove test workflow check
Júlia Mir Pedrol
committed
add code tests
Júlia Mir Pedrol
committed
Merge branch 'dev' into modules_test
mirpedrol
authored
fix linting
Júlia Mir Pedrol
committed
apply comments from PR review
Júlia Mir Pedrol
committed
Merge branch 'modules_test' of https://github.com/asthara10/tools into modules_test
Júlia Mir Pedrol
committed
fix linting
Júlia Mir Pedrol
committed

Commits on Apr 27, 2022

apply comments from PR
Júlia Mir Pedrol
committed
fix test
Júlia Mir Pedrol
committed
always set profile
Júlia Mir Pedrol
committed
do not abbreviate env var
Júlia Mir Pedrol
committed
add new test
Júlia Mir Pedrol
committed
update CHANGELOG
Júlia Mir Pedrol
committed

Commits on Apr 28, 2022

specify test files as test_*.py in pytest.ini
Júlia Mir Pedrol
committed
apply comments from PR review
Júlia Mir Pedrol
committed

Commits on Apr 29, 2022

check if profile is available
Júlia Mir Pedrol
committed
modify linting
Júlia Mir Pedrol
committed

Commits on May 2, 2022

Add nf-core/modules folder warning

mirpedrol
and
ggabernet
authored
Add valid profile check

mirpedrol
and
fabianegli
authored
fix linting
Júlia Mir Pedrol
committed
avoid using shell=True when checking profile
Júlia Mir Pedrol
committed
Apply suggestions from code review

mirpedrol
and
ewels
authored
remove unnecessary libraryes
Júlia Mir Pedrol
committed

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