Replace for loop in create_pedigree_file
#683
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jemten
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Mar 3, 2025
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| samples.each { sample -> | ||
| def sample_name = sample.sample | ||
| if (!samples_list.contains(sample_name)) { | ||
| outfile_text += "\\n" + [samples[i].case_id, sample_name, samples[i].paternal, samples[i].maternal, samples[i].sex, samples[i].phenotype].join('\\t') | ||
| outfile_text += "\\n" + [sample.case_id, sample_name, sample.paternal, sample.maternal, sample.sex, sample.phenotype].join('\\t') |
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Fixes language server issues for this module.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).