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Pull requests: nf-core/modules

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Pull requests list

new module: modkit/callmods new module Adding a new module Ready for Review
#9186 opened Oct 11, 2025 by YiJin-Xiong Loading…
13 of 17 tasks
1
@YiJin-Xiong
Add fastq seqkit sana pair
#9185 opened Oct 10, 2025 by vagkaratzas Loading…
9 of 17 tasks
EBI MGnify - ENA Genome uploader
#9177 opened Oct 8, 2025 by mberacochea • Draft
17 tasks
15
Add diann subworkflow and module
#9173 opened Oct 6, 2025 by pinin4fjords Loading…
17 tasks
2
adding homer merge peaks, and a peakcalling workflow
#9172 opened Oct 5, 2025 by cmatKhan Loading…
4
Hificnv—copy-number variant caller for PacBio HiFi long-read data new module Adding a new module Ready for Review
#9165 opened Oct 2, 2025 by chaochaowong Loading…
14 tasks done
@chaochaowong
Update biocontainers/das_tool Docker tag to v1.1.5
#9161 opened Oct 1, 2025 by renovate bot Loading…
2 tasks
Update biocontainers/checkm-genome Docker tag to v1.2.4
#9160 opened Oct 1, 2025 by renovate bot Loading…
2 tasks
POC: topics
#9159 opened Sep 30, 2025 by nvnieuwk • Draft
5
Update PureCN to support mapping bias and VCF input
#9156 opened Sep 30, 2025 by lbeltrame Loading…
7 tasks done
1
@lbeltrame
10
Parabricks starfusion
#9150 opened Sep 26, 2025 by gburnett-nvidia Loading…
17 tasks
@gburnett-nvidia
37
Add task.ext.suffix for CSVTK_CONCAT enhancement New feature or request
#9144 opened Sep 26, 2025 by LeonHafner Loading…
1 of 17 tasks
@LeonHafner
2
Add module seqfu/check
#9141 opened Sep 25, 2025 by georgette-femerling • Draft
5 of 17 tasks
1
feat: Integrate wave_singularity.py script for Singularity container HTTPS SIF URL reporting
#9079 opened Sep 16, 2025 by Copilot AI • Draft
@edmundmiller @Copilot
Update meta.yml
#9060 opened Sep 15, 2025 by lucacozzuto Loading…
1 of 17 tasks
7918 pharokka update stub
#9055 opened Sep 13, 2025 by shivangi-7 • Draft
1
Deacon filter and update deacon index
#9034 opened Sep 11, 2025 by sofstam Loading…
8 of 17 tasks
2
Update CELLRANGER_MKREF
#9007 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
1
Update CELLRANGER_MKGTF
#9006 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
9
feat: samclip module new module Adding a new module Ready for Review
#8999 opened Sep 4, 2025 by emmcauley Loading…
13 of 17 tasks
1
12
Adds new Devcontainer Setup for use with Codespaces
#8983 opened Sep 2, 2025 by JulianFlesch Loading…
17 tasks
1
@JulianFlesch
First pass at POC for topics update for bwamem2 and dependencies
#8978 opened Sep 1, 2025 by maxulysse • Draft
17 tasks
5
Swap fasta_index_dna to nf-test - removing all remnants of pytests
#8962 opened Aug 27, 2025 by SPPearce Loading…
17 tasks
1
LINKS: Fix thread limit
#8958 opened Aug 27, 2025 by nschan Loading…
1
Example git repo with pip: in an environment
#8954 opened Aug 26, 2025 by edmundmiller Loading…
@edmundmiller
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