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Description
Have you checked the docs?
Description of the bug
The $DB variable is constructed in the module through:
DB=`find -L ./ -name "*.nhr" | sed 's/\\.nhr\$//'`
if test -z "\$DB"
then
DB=`find -L ./ -name "*.phr" | sed 's/\\.phr\$//'`
fi
However, with big databases, the files are appended with a number (database.fna.1.nhr, database.fna.2.nhr, database.fna.n.nhr).
When passing a big database (such as core_nt) to blastdbcmd, it then produces the following error with big databases:
Error: Too many positional arguments (1)
I fixed it internally to my pipeline but it should probably be corrected at the module level as well.
Command used and terminal output
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bugSomething isn't workingSomething isn't working