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new module: modkit/dmr

new moduleAdding a new moduleAdding a new module

Status: Open.

#9182 In nf-core/modules;

· YiJin-Xiong opened on Oct 9, 2025

new module: modkit/callmods

new moduleAdding a new moduleAdding a new module

Status: Open.

#9181 In nf-core/modules;

· YiJin-Xiong opened on Oct 9, 2025

blast/blastdbcmd fails with big databases

bugSomething isn't workingSomething isn't working

Status: Open.

#9179 In nf-core/modules;

· leapicard opened on Oct 9, 2025

new module: stacks/ref_map

new moduleAdding a new moduleAdding a new module

Status: Open.

#9167 In nf-core/modules;

· TheGreatJack opened on Oct 2, 2025

[FEATURE] PureCN: support VCF input as part of purecn/run

Status: Open.

#9155 In nf-core/modules;

· lbeltrame opened on Sep 30, 2025

cellpose 3.1.0 interprets 3D TIFFs as Z-stacks rather than channels by default

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#9149 In nf-core/modules;

· jmuhlich opened on Sep 26, 2025

Remove pytest-workflow CI

Status: Open.

Task

#9148 In nf-core/modules;

· edmundmiller opened on Sep 26, 2025

new module: seqfu/check

new moduleAdding a new moduleAdding a new module

Status: Open.

#9140 In nf-core/modules;

· georgette-femerling opened on Sep 25, 2025

new module: parabricks/starfusion

new moduleAdding a new moduleAdding a new module

Status: Open.

#9133 In nf-core/modules;

· gburnett-nvidia opened on Sep 24, 2025

GATK4 conda failures

bugSomething isn't workingSomething isn't working

CI-issuecontinous integration issuecontinous integration issue

conda-fail

testsRelated to automated testsRelated to automated tests

Status: Open.

#9092 In nf-core/modules;

· matthdsm opened on Sep 18, 2025

update module: CLAIR3

update module

Status: Open.

#9081 In nf-core/modules;

· awgymer opened on Sep 17, 2025

new module: modkit/repair

new moduleAdding a new moduleAdding a new module

Status: Open.

#9075 In nf-core/modules;

· jkh00 opened on Sep 16, 2025