Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 2, 2025

• Merge pull request #243 from nf-core/dev

  Show description for b94cbc7
  scwatts

  authored
  b94cbc7

  Copy full SHA for b94cbc7

• Merge pull request #245 from nf-core/review-and-other-adjustments

  Show description for dedcbe7
  scwatts

  authored
  dedcbe7

  Copy full SHA for dedcbe7

Commits on Sep 1, 2025

• Update, fix documentation

  

  Stephen Watts

  committed
  5cdf451

  Copy full SHA for 5cdf451

• Update README.md with reviewer feedback

  

  Stephen Watts

  committed
  afbaf92

  Copy full SHA for afbaf92

• Limit nf-test GH Action to stub test

  Show description for 1a5bdb2
  

  Stephen Watts

  committed
  1a5bdb2

  Copy full SHA for 1a5bdb2

• Allow test profile to be run by nf-test

  

  Stephen Watts

  committed
  b4d2202

  Copy full SHA for b4d2202

Commits on Aug 28, 2025

• Fix check for multiple longitudinal sample entries

  

  Stephen Watts

  committed
  d15aa12

  Copy full SHA for d15aa12

Commits on Aug 26, 2025

• Merge pull request #242 from nf-core/prepare-release-2.2.0

  Show description for 5359570
  scwatts

  authored
  5359570

  Copy full SHA for 5359570

• Merge pull request #241 from nf-core/general-updates-and-fixes

  Show description for 2e5bc8a
  scwatts

  authored
  2e5bc8a

  Copy full SHA for 2e5bc8a

• Add note about CRAM requirements

  

  Stephen Watts

  committed
  6e8e9d7

  Copy full SHA for 6e8e9d7

Commits on Aug 25, 2025

• Bump to 2.2.0

  

  Stephen Watts

  committed
  21c3417

  Copy full SHA for 21c3417

• Update CHANGELOG.md

  

  Stephen Watts

  committed
  08c3a19

  Copy full SHA for 08c3a19

• Disallow 'OFF' hmftools_log_level value

  Show description for fa392ae
  

  Stephen Watts

  committed
  fa392ae

  Copy full SHA for fa392ae

• Set and use input paths for panel resource creation

  

  Stephen Watts

  committed
  e011cde

  Copy full SHA for e011cde

• Allow prepare reference through standard modes

  

  Stephen Watts

  committed
  b381f59

  Copy full SHA for b381f59

• Merge pull request #229 from alexiswl/bugfix/support-relative-paths-for-fastq-data

  Show description for cb620c4
  scwatts

  authored
  cb620c4

  Copy full SHA for cb620c4

Commits on Aug 20, 2025

• Set min stringr stringi version for CUPPA

  Show description for 99c040d
  

  Stephen Watts

  committed
  99c040d

  Copy full SHA for 99c040d

Commits on Aug 19, 2025

• Reintroduce use of decoy sequence images for ESVEE

  

  Stephen Watts

  committed
  8492c2d

  Copy full SHA for 8492c2d

Commits on Aug 17, 2025

• Handle more FASTQ, longitudinal sample input cases

  

  Stephen Watts

  committed
  8af7868

  Copy full SHA for 8af7868

Commits on Aug 13, 2025

• Apply fixes, cleanup to SAGE processes

  

  Stephen Watts

  committed
  a66a93d

  Copy full SHA for a66a93d

• Apply fixes, cleanup for ESVEE module

  

  Stephen Watts

  committed
  6fd3e75

  Copy full SHA for 6fd3e75

• Update reference data paths

  

  Stephen Watts

  committed
  213afd1

  Copy full SHA for 213afd1

• Add prepare reference workflow

  

  Stephen Watts

  committed
  5eb43d9

  Copy full SHA for 5eb43d9

• Refactor all Groovy code under workflow blocks

  

  Stephen Watts

  committed
  17872e7

  Copy full SHA for 17872e7

• Apply formatting and syntax changes

  

  Stephen Watts

  committed
  617c165

  Copy full SHA for 617c165

Commits on Aug 12, 2025

• Apply hmftools log level through process config

  

  Stephen Watts

  committed
  d4374b4

  Copy full SHA for d4374b4

• Merge pull request #223 from nf-core/nf-core-template-merge-3.3.2

  Show description for 1443765
  scwatts

  authored
  1443765

  Copy full SHA for 1443765

• Publish all SAGE outputs into separate directories

  Show description for b0bdd00
  

  Stephen Watts

  committed
  b0bdd00

  Copy full SHA for b0bdd00

• Update nf-test snap for default test

  

  Stephen Watts

  committed
  5f6024b

  Copy full SHA for 5f6024b

• Merge remote-tracking branch 'nf-core/dev' into template-3.3.2-merge

  

  Stephen Watts

  committed
  81bb310

  Copy full SHA for 81bb310

• Merge pull request #235 from nf-core/publish-selected-command-files

  Show description for f415035
  scwatts

  authored
  f415035

  Copy full SHA for f415035

• Merge remote-tracking branch 'nf-core/dev' into publish-selected-command-files

  

  Stephen Watts

  committed
  d70e494

  Copy full SHA for d70e494

• Merge pull request #234 from nf-core/hartwig-updates

  Show description for bd480fe
  scwatts

  authored
  bd480fe

  Copy full SHA for bd480fe

• Merge pull request #233 from nf-core/update-documentation

  Show description for 67d5d73
  scwatts

  authored
  67d5d73

  Copy full SHA for 67d5d73

• Merge pull request #232 from nf-core/improve-prepare-reference

  Show description for 4113d05
  scwatts

  authored
  4113d05

  Copy full SHA for 4113d05

Pagination

Previous

Next