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Commits on Sep 3, 2025

• Merge pull request #247 from nf-core/improve-samplesheet-validation

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• Update CHANGELOG.md

  

  Stephen Watts

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• Merge pull request #246 from nf-core/post-release-bump

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• Post release bump

  

  Stephen Watts

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Commits on Sep 2, 2025

• Merge pull request #243 from nf-core/dev

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• Merge pull request #245 from nf-core/review-and-other-adjustments

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Commits on Sep 1, 2025

• Update, fix documentation

  

  Stephen Watts

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• Update README.md with reviewer feedback

  

  Stephen Watts

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• Limit nf-test GH Action to stub test

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  Stephen Watts

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• Allow test profile to be run by nf-test

  

  Stephen Watts

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Commits on Aug 28, 2025

• Fix check for multiple longitudinal sample entries

  

  Stephen Watts

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Commits on Aug 26, 2025

• Improve samplesheet validation

  

  Stephen Watts

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• Merge pull request #242 from nf-core/prepare-release-2.2.0

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• Merge pull request #241 from nf-core/general-updates-and-fixes

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• Add note about CRAM requirements

  

  Stephen Watts

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Commits on Aug 25, 2025

• Bump to 2.2.0

  

  Stephen Watts

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• Update CHANGELOG.md

  

  Stephen Watts

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• Disallow 'OFF' hmftools_log_level value

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  Stephen Watts

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• Set and use input paths for panel resource creation

  

  Stephen Watts

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• Allow prepare reference through standard modes

  

  Stephen Watts

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• Merge pull request #229 from alexiswl/bugfix/support-relative-paths-for-fastq-data

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Commits on Aug 20, 2025

• Set min stringr stringi version for CUPPA

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  Stephen Watts

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Commits on Aug 19, 2025

• Reintroduce use of decoy sequence images for ESVEE

  

  Stephen Watts

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Commits on Aug 17, 2025

• Handle more FASTQ, longitudinal sample input cases

  

  Stephen Watts

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Commits on Aug 13, 2025

• Apply fixes, cleanup to SAGE processes

  

  Stephen Watts

  committed
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• Apply fixes, cleanup for ESVEE module

  

  Stephen Watts

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• Update reference data paths

  

  Stephen Watts

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• Add prepare reference workflow

  

  Stephen Watts

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• Refactor all Groovy code under workflow blocks

  

  Stephen Watts

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• Apply formatting and syntax changes

  

  Stephen Watts

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Commits on Aug 12, 2025

• Apply hmftools log level through process config

  

  Stephen Watts

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• Merge pull request #223 from nf-core/nf-core-template-merge-3.3.2

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• Publish all SAGE outputs into separate directories

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  Stephen Watts

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• Update nf-test snap for default test

  

  Stephen Watts

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• Merge remote-tracking branch 'nf-core/dev' into template-3.3.2-merge

  

  Stephen Watts

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