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Commits on Aug 26, 2024

• Merge pull request #85 from nf-core/dev

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Commits on Aug 23, 2024

• Merge pull request #90 from nf-core/update-changelog

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• Update CHANGELOG.md

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Commits on Aug 15, 2024

• Merge pull request #87 from nf-core/update-pave-somatic-command

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• Merge pull request #88 from nf-core/fix-software-version-reporting

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• Use consistent version mix invoke format

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• Add missed outputs into versions channel

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• Use consistent casing

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• Update PAVE somatic command

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Commits on Aug 8, 2024

• Merge pull request #86 from nf-core/add-missing-markdups-conda-directive

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• Add missing conda directive to MarkDups process

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Commits on Aug 7, 2024

• Merge pull request #78 from nf-core/fix-missing-panel-param-check

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Commits on Aug 6, 2024

• Adjust missing panel param error message

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• Add panel param null check in param validation

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• Merge pull request #76 from nf-core/lilac-samplesheet-bam-input

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• Allow RNA BAM from samplesheet as input to LILAC

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Commits on Aug 1, 2024

• Merge pull request #72 from nf-core/initial-release-review-changes

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Commits on Jul 31, 2024

• Switch to BAM inputs for test_stub samplesheet

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• Use stub samplesheet for test_stub profile

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• Fix MarkDups URLs

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• Update input samplesheet URL for tests

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• Use the HMF abbreviation more in README.md

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• Comment out any hint of citations

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• Correct Conda SAGE version

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• Correct Conda GRIDSS build version

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• Add summary note on pipeline function in README.md

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Commits on Jul 24, 2024

• Merge pull request #70 from nf-core/initial-release-review-changes

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Commits on Jul 19, 2024

• Pin Tar version in extracttarball conda env

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• Use correct AMBER version in conda env file

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• Improve fenced codeblock syntax highlight

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Commits on Jul 18, 2024

• Merge pull request #69 from nf-core/update-usage

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• Add note on sequencing depth to usage.md

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• Fix grammar in usage.md

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• Merge pull request #68 from nf-core/initial-release-review-changes

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• Minor improvements to nextflow_schema.json

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