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Starred repositories
clumsy makes your network condition on Windows significantly worse, but in a controlled and interactive manner.
A CLI tool for analyzing Claude Code usage from local JSONL files.
A fork of exonerate: a generic tool for sequence alignment
Toolset for SV simulation, comparison and filtering
Personal diploid genome creation and coordinate conversion
Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - our genomic machine learning python package.
The power of Claude Code + [Gemini / OpenAI / Grok / OpenRouter / Ollama / Custom Model / All Of The Above] working as one.
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.
RooCodeInc / Roo-Code
Forked from cline/clineRoo Code (prev. Roo Cline) gives you a whole dev team of AI agents in your code editor.
An AI-powered task-management system you can drop into Cursor, Lovable, Windsurf, Roo, and others.
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
A comprehensive cancer DNA/RNA analysis and reporting pipeline
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Wally: Visualization of aligned sequencing reads and contigs
A tutorial on structural variant calling for short read sequencing data
A library of free open source icons for science illustrations in biology and chemistry
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Joint structural variant and copy number variant caller for HiFi sequencing data
An implementation of model parallel autoregressive transformers on GPUs, based on the Megatron and DeepSpeed libraries
Google Gen AI Python SDK provides an interface for developers to integrate Google's generative models into their Python applications.