Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."

BindCraft modified to make PyRosetta use and installation optional: no license needed

Scripts for building protein oligomers regulated by NCAA

The package of ProBuilder from Longxing Cao lab

Flow Matching for Electron Redistribution

Inference code for RFdiffusion2

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…

A Unified Evaluation Suite for Protein Design

Official repository of ReactZyme

Tools (written in C using htslib) for manipulating next-generation sequencing data

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

A simplified implementation of DSSP algorithm for PyTorch and NumPy

Protein representation and design under a single training scheme

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

Structure prediction and design of proteins with noncanonical amino acids

Linux kernel source tree

BAMBOO (Bytedance AI Molecular BOOster) is an AI-driven machine learning force field designed for precise and efficient electrolyte simulations.

official implementation of PhysChemDiff: Physicochemical Property-Guided Protein Generation Using Latent Diffusion Models

Inverse folding algorithm to design conformationally-specific proteins