Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

A simplified implementation of DSSP algorithm for PyTorch and NumPy

Protein representation and design under a single training scheme

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

Structure prediction and design of proteins with noncanonical amino acids

Linux kernel source tree

BAMBOO (Bytedance AI Molecular BOOster) is an AI-driven machine learning force field designed for precise and efficient electrolyte simulations.

official implementation of PhysChemDiff: Physicochemical Property-Guided Protein Generation Using Latent Diffusion Models

Inverse folding algorithm to design conformationally-specific proteins

This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.

Public Release of ProGen3 family of Models

Variational Autoencoder for protein sequence generation

Codebase for the paper "Systematic comparison of Generative AI-Protein Models" by Alexander J Barnett, Rajendra KC, Pratikshya Pandey, Pamodha Somasiri, Kirsten A Fairfax, Sandy Hung, Alex W Hewitt…

Versatile human antibody sequence design

ProDualNet and multi-target protein sequence design 2025 pytorch implementation

A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery

Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and relies on a tailored scalable transformer architecture.

Genome modeling and design across all domains of life