This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.

Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins

The public versio

Fast deep learning methods for large-scale protein-protein interaction screening

Repo for counting stars and contributing. Press F to pay respect to glorious developers.

Render any git repo into a single static HTML page for humans or LLMs

The simplest, fastest repository for training/finetuning medium-sized GPTs.

Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)

This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)

Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)

A trainable PyTorch reproduction of AlphaFold 3.

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gpt-oss-120b and gpt-oss-20b are two open-weight language models by OpenAI

程序员延寿指南 | A programmer's guide to live longer

Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3

Custom fork of AlphaFold 3 enabling explicit modeling of crosslinks

Explicit crosslinks in AlphaFold 3

AlphaLink: Integrating crosslinking MS data into OpenFold

Code for the ProteinMPNN paper

👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz

English Template for PKU Doctoral Dissertation

List of computational protein design research labs

Generation of protein sequences and evolutionary alignments via discrete diffusion models