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@BDI-pathogens

Pandemic Sciences Institute: Pathogen Dynamics Group

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  1. OpenABM-Covid19 OpenABM-Covid19 Public

    OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epidemic

    Python 119 74

  2. covid-19_instant_tracing covid-19_instant_tracing Public

    Preprints from the BDI Pathogen Dynamics team regarding digital contact tracing and other non-pharmaceutical interventions for Covid-19. More details on our website:

    101 12

  3. phyloscanner phyloscanner Public

    Phylogenetics between and within hosts at once, all along the genome.

    HTML 49 14

  4. EpiLine EpiLine Public

    Bayesian Modelling in Epidemiology Case Line Lists

    R 14 4

  5. covid-19_shiny covid-19_shiny Public

    Code for "Digital contact tracing for SARS-COV-2" shiny app

    R 10 3

  6. POPART-IBM POPART-IBM Public

    C code of the individual-based model developed as part of the HPTN071 (PopART) trial

    C 5 4

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