Inspired by ColabFold, a repository aiming to make RNA-based models accessible to all.

• SpliceAI
• Pangolin
• SpliceTransformer

• Borzoi

• RiNALMo: TODO
• RNABERT: TODO

• SpliceAI
  • repository: https://github.com/Illumina/SpliceAI
  • paper: https://doi.org/10.1016/j.cell.2018.12.015
• Pangolin
  • repository: https://github.com/tkzeng/Pangolin
  • paper: https://doi.org/10.1186/s13059-022-02664-4
• SpliceTransformer
  • repository: https://github.com/ShenLab-Genomics/SpliceTransformer
  • paper: https://doi.org/10.1038/s41467-024-53088-6
• Borzoi
  • original repository: https://github.com/calico/borzoi
  • original paper: https://doi.org/10.1038/s41588-024-02053-6
  • pytorch version:
    • repository: https://github.com/johahi/borzoi-pytorch
    • paper: https://doi.org/10.1101/2024.12.18.629121
• RiNALMo:
  • repository: https://github.com/lbcb-sci/RiNALMo
  • paper: https://arxiv.org/abs/2403.00043
• RNABERT:
  • repository: https://github.com/mana438/RNABERT
  • paper: https://doi.org/10.1093/nargab/lqac012