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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 7k 2k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 228

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 222 20

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 243 73

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 144 40

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 590 109

Repositories

Showing 10 of 94 repositories
  • nnssl Public
    MIC-DKFZ/nnssl’s past year of commit activity
    Python 60 CC-BY-SA-4.0 11 3 4 Updated Jul 7, 2025
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 6,973 Apache-2.0 2,044 298 (1 issue needs help) 16 Updated Jul 3, 2025
  • ScribbleBench Public

    [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation

    MIC-DKFZ/ScribbleBench’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 2, 2025
  • BraTPRO Public
    MIC-DKFZ/BraTPRO’s past year of commit activity
    Python 3 Apache-2.0 0 1 0 Updated Jul 1, 2025
  • LesionLocator Public

    LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.

    MIC-DKFZ/LesionLocator’s past year of commit activity
    Python 55 GPL-3.0 3 3 0 Updated Jul 1, 2025
  • nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

    MIC-DKFZ/nnDetection’s past year of commit activity
    Python 590 Apache-2.0 109 23 3 Updated Jun 26, 2025
  • MIC-DKFZ/nnDetection-finetuning’s past year of commit activity
    0 0 0 0 Updated Jun 26, 2025
  • MIC-DKFZ/dynamic-network-architectures’s past year of commit activity
    Python 111 Apache-2.0 44 5 1 Updated Jun 25, 2025
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 214 Apache-2.0 21 10 0 Updated Jun 24, 2025
  • MultiTalent Public

    Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"

    MIC-DKFZ/MultiTalent’s past year of commit activity
    Python 59 Apache-2.0 3 2 0 Updated Jun 24, 2025
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