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11. RECOMB 2007: Oakland, CA, USA
- Terence P. Speed, Haiyan Huang:
Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings. Lecture Notes in Computer Science 4453, Springer 2007, ISBN 3-540-71680-7 - Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna
, Roded Sharan:
QNet: A Tool for Querying Protein Interaction Networks. 1-15 - Rohit Singh
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. 16-31 - Allister Bernard, David S. Vaughn, Alexander J. Hartemink:
Reconstructing the Topology of Protein Complexes. 32-46 - T. M. Murali, Corban G. Rivera:
Network Legos: Building Blocks of Cellular Wiring Diagrams. 47-61 - Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli:
An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments. 62-76 - Eilon Sharon
A Feature-Based Approach to Modeling Protein-DNA Interactions. 77-91 - Joshua A. Grochow
Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking. 92-106 - Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink:
Nucleosome Occupancy Information Improves de novo Motif Discovery. 107-121 - Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein
Framework for Identifying Common Aberrations in DNA Copy Number Data. 122-136 - Wenyi Wang
Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models. 137-150 - Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing:
GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data. 151-165 - Hiroyuki Kuwahara, Chris J. Myers:
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions. 166-180 - Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic:
Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding. 181-195 - Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin:
Reconstructing the Phylogeny of Mobile Elements. 196-210 - Daniel H. Huson, Tobias H. Klöpper:
Beyond Galled Trees - Decomposition and Computation of Galled Networks. 211-225 - Ydo Wexler, Dan Geiger:
Variational Upper Bounds for Probabilistic Phylogenetic Models. 226-237 - Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe:
Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search. 238-252 - Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jaroslaw Pillardy:
Support Vector Training of Protein Alignment Models. 253-267 - Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato:
Tools for Simulating and Analyzing RNA Folding Kinetics. 268-282 - Yue Lu, Sing-Hoi Sze:
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. 283-295 - Joël R. Pradines, Vlado Dancík, Alan Ruttenberg
Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data. 296-310 - Antonio Piccolboni:
Multivariate Segmentation in the Analysis of Transcription Tiling Array Data. 311-324 - Anitha Kannan, Andrew Emili, Brendan J. Frey:
A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements. 325-338 - Michal Ozery-Flato, Ron Shamir:
Rearrangements in Genomes with Centromeres Part I: Translocations. 339-353 - Erik Corona, Benjamin J. Raphael, Eleazar Eskin:
Identification of Deletion Polymorphisms from Haplotypes. 354-365 - Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. 366-380 - Chen Yanover, Ora Schueler-Furman, Yair Weiss:
Minimizing and Learning Energy Functions for Side-Chain Prediction. 381-395 - Anshul Nigham, David Hsu:
Protein Conformational Flexibility Analysis with Noisy Data. 396-411 - Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. 412-429 - Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk:
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. 430-443 - Marshall W. Bern, David Goldberg:
Improved Ranking Functions for Protein and Modification-Site Identifications. 444-458 - Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble:
Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. 459-472 - Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. 473-487 - Yufeng Wu:
Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms. 488-502 - Srinath Sridhar, Satish Rao, Eran Halperin:
An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. 503-517 - Wah-Heng Lee, Wing-Kin Sung:
RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. 518-532 - Cyrus L. Harmon
Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs. 533-547
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