Nature Search

Common to rare transfer learning (CORAL) enables inference and prediction for a quarter million rare Malagasy arthropods

CORAL can infer the occurrence of rare species based on common species, using DNA metabarcoding data or other high-dimensional biodiversity data. The approach is illustrated on a large-scale biodiversity survey from Madagascar.

Otso Ovaskainen
Steven Winter
David Dunson
ResearchOpen Access23 Sept 2025
Nature Methods

Volume: 22, P: 2074-2082
Human contributions to global soundscapes are less predictable than the acoustic rhythms of wildlife

Analysis of soundscape data from 139 globally distributed sites reveals that sounds of biological origin exhibit predictable rhythms depending on location and season, whereas sounds of anthropogenic origin are less predictable. Comparisons between paired urban–rural sites show that urban green spaces are noisier and dominated by sounds of technological origin.

Panu Somervuo
Tomas Roslin
Otso Ovaskainen
ResearchOpen Access09 Jul 2025
Nature Ecology & Evolution

Volume: 9, P: 1585-1598
Structure and function of the soil microbiome underlying N₂O emissions from global wetlands

The wetland soil microbiome has a major impact on greenhouse gas emissions. Here the authors characterize how a group of archaea contribute to N₂O emissions and find that climate and land use changes could promote these organisms.

Mohammad Bahram
Mikk Espenberg
Ülo Mander
ResearchOpen Access17 Mar 2022
Nature Communications

Volume: 13, P: 1-10
A global database of soil microbial phospholipid fatty acids and enzyme activities

Laura G. van Galen
Gabriel Reuben Smith
Johan van den Hoogen
ResearchOpen Access26 Sept 2025
Scientific Data

Volume: 12, P: 1-13
Shifting community assembly mechanisms in soil eukaryotes over successional time and their implications for restoration

Farzad Aslani
Leho Tedersoo
T. Martijn Bezemer
ResearchOpen Access16 Jul 2025
Scientific Reports

Volume: 15, P: 1-11
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

Leho Tedersoo
Mohammad Bahram
Kessy Abarenkov
Research14 Jul 2015
The ISME Journal

Volume: 10, P: 346-362
Structure and function of the global topsoil microbiome

Metagenomic, chemical and biomass analyses of topsoil samples from around the world reveal spatial and environmental trends in microbial community composition and genetic diversity.

Mohammad Bahram
Falk Hildebrand
Peer Bork
Research01 Aug 2018
Nature

Volume: 560, P: 233-237
Mycobiome diversity: high-throughput sequencing and identification of fungi

Fungi are enormously diverse, not the least in potential genetic markers that can be used for high-throughput sequencing studies of the mycobiome. In this Review, Nilsson and colleagues provide advice for leveraging next-generation technologies to explore mycobiome diversity in different habitats.

R. Henrik Nilsson
Sten Anslan
Leho Tedersoo
Reviews15 Nov 2018
Nature Reviews Microbiology

Volume: 17, P: 95-109
Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment

Mohammad Bahram
Petr Kohout
Leho Tedersoo
Research22 Sept 2015
The ISME Journal

Volume: 10, P: 885-896

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