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Showing 1–50 of 452 results
Advanced filters: Author: Richard A Gibbs Clear advanced filters
  • GIANT, a genetically informed brain atlas, integrates genetic heritability with neuroanatomy. It shows strong neuroanatomical validity and surpasses traditional atlases in discovery power for brain imaging genomics.

    • Jingxuan Bao
    • Junhao Wen
    • Li Shen
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • The mechanisms that regulate the electrochemical equilibrium of condensates are not well understood. Now it has been shown that the aging process of biomolecular condensates can dynamically modulate the electrochemical equilibrium between phases, thereby affecting the physicochemical functions of condensates. This process potentially provides an active mechanism modulating intracellular ion flux.

    • Wen Yu
    • Xiao Guo
    • Yifan Dai
    Research
    Nature Chemistry
    P: 1-11
  • Understanding the physical origin on hysteresis in organic electrochemical transistors is important for achieving non-volatility. Here, the authors report a thermodynamic framework that explains the emergence of bistable device operation via the interplay of enthalpy and entropy.

    • Lukas M. Bongartz
    • Richard Kantelberg
    • Karl Leo
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-9
  • Smoking remains a leading cause of preventable death and disease. Here, the authors explore the link between smoking and DNA methylation using arrays and next generation sequencing, and develop mCigarette, an epigenetic biomarker of smoking.

    • Aleksandra D. Chybowska
    • Elena Bernabeu
    • Riccardo E. Marioni
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Accurately genotyping structural variant (SV) alleles is crucial to genomics research. Here the authors present a rapid and accurate method that avoids common errors seen with other genotypers, particularly for neighboring SVs within and across samples.

    • Adam C. English
    • Fabio Cunial
    • Fritz J. Sedlazeck
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Here the authors report results from a randomized controlled trial comparing the ‘HPV screen, triage and treat’ with ‘HPV screen and treat’ strategies in women living with HIV. At one year of follow-up ‘HPV screen, VIA triage and treat’ strategy was non-inferior to the ‘screen and treat’ strategy in regards to HPV clearance.

    • Smita Joshi
    • Richard Muwonge
    • Partha Basu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Though models describing the operating mechanism of organic electrochemical transistors (OECTs) have been developed, these models are unable to accurately reproduce OECT electrical characteristics. Here, the authors report a thermodynamic-based framework that accurately models OECT operation.

    • Matteo Cucchi
    • Anton Weissbach
    • Karl Leo
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-8
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • Generating new sensible molecular structures is a key problem in computer aided drug discovery. Here the authors propose a graph-based molecular generative model that outperforms previously proposed graph-based generative models of molecules and performs comparably to several SMILES-based models.

    • Omar Mahmood
    • Elman Mansimov
    • Kyunghyun Cho
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • The melting temperature of hydrogen drops at high pressures, which suggests the possible emergence of a low-temperature liquid state of metallic hydrogen. Chen et al.confirm the existence of this phase in simulations and show how the quantum motion of the protons has a critical role in its stabilization.

    • Ji Chen
    • Xin-Zheng Li
    • Enge Wang
    ResearchOpen Access
    Nature Communications
    Volume: 4, P: 1-5
  • Molten Sn as a metallic solvent presents economic feasibility and offers unique surface atomic structures, expanding the concept of liquid metal catalysis. As a demonstration, SnIn0.1034Cu0.0094 enables selective H2 production from hydrocarbons.

    • Junma Tang
    • Nastaran Meftahi
    • Kourosh Kalantar-Zadeh
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • A challenge with the use of metal anodes in batteries is their inability to sustain structural stability, especially at high currents. Here the authors examine electrochemomechanical properties of metal anodes and demonstrate an effective semi-solid electrode approach at practically relevant conditions.

    • Richard J.-Y. Park
    • Christopher M. Eschler
    • Yet-Ming Chiang
    Research
    Nature Energy
    Volume: 6, P: 314-322
  • The goal of the 1000 Genomes Project is to provide in-depth information on variation in human genome sequences. In the pilot phase reported here, different strategies for genome-wide sequencing, using high-throughput sequencing platforms, were developed and compared. The resulting data set includes more than 95% of the currently accessible variants found in any individual, and can be used to inform association and functional studies.

    • Richard M. Durbin
    • David Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 467, P: 1061-1073
  • The synthesis of molecular knots remains challenging. Here, the authors report the synthesis of a chiral molecular trefoil metallaknot by self-assembly which contains only 54 atoms in the backbone.

    • Zhiwen Li
    • Jingjing Zhang
    • Richard J. Puddephatt
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-6
  • Results for the final phase of the 1000 Genomes Project are presented including whole-genome sequencing, targeted exome sequencing, and genotyping on high-density SNP arrays for 2,504 individuals across 26 populations, providing a global reference data set to support biomedical genetics.

    • Adam Auton
    • Gonçalo R. Abecasis
    • Gonçalo R. Abecasis
    ResearchOpen Access
    Nature
    Volume: 526, P: 68-74
  • The extent to which chemical products of water radiolysis could sustain subseafloor microbial life is unknown. Here the authors show that sediment catalyzes radiolytic production of H2 and oxidants, providing the primary energy source for life in ancient marine sediment.

    • Justine F. Sauvage
    • Ashton Flinders
    • Steven D’Hondt
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • Asymmetric glucose tracers reveal the simultaneous use and unique benefits of parallel glycolytic pathways. Cells possessing both textbook glycolysis and Entner–Doudoroff glycolysis have a selective advantage in dynamic environments.

    • Richard C. Law
    • Glenn Nurwono
    • Junyoung O. Park
    Research
    Nature Chemical Biology
    Volume: 20, P: 314-322
  • At the nanoscale, elastic strain and crystal defects largely influence the properties and functionalities of materials. Here, the authors report an unusual twin boundary migration process in a single platinum nanoparticle during carbon monoxide oxidation using Bragg coherent diffraction imaging.

    • Jérôme Carnis
    • Aseem Rajan Kshirsagar
    • Marie-Ingrid Richard
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • Thirty years on from the launch of the Human Genome Project, Richard Gibbs reflects on the promisesthat this voyage of discovery bore. Its success should be measured by how this project transformed the rules of research, the way of practising biological discovery and the ubiquitous digitization of biological science.

    • Richard A. Gibbs
    Comments & Opinion
    Nature Reviews Genetics
    Volume: 21, P: 575-576
  • A flavin-dependent halogenase with a remarkable preference for iodination has now been discovered. The halogenase (VirX1) was discovered using a bioinformatics-based approach and comes from a cyanophage. Structural characterization and kinetic studies show that VirX1 possesses broad substrate tolerance, making it an attractive tool for synthesis.

    • Danai S. Gkotsi
    • Hannes Ludewig
    • Rebecca J. M. Goss
    Research
    Nature Chemistry
    Volume: 11, P: 1091-1097
  • An asymmetric pentalene-containing C1(51383)-C84 fullerene cage is found in two different metal carbide metallofullerenes. This particular cage can, in simple steps, rearrange into many well-known fullerene cages that are more stable and more symmetric, suggesting it is likely that metallofullerenes are generated by a ‘top-down’ formation mechanism.

    • Jianyuan Zhang
    • Faye L. Bowles
    • Harry C. Dorn
    Research
    Nature Chemistry
    Volume: 5, P: 880-885
  • Superionic states of matter simultaneously exhibit some of the properties of a liquid and of a solid. Detailed numerical simulations predict two superionic phases in mixtures of helium and water.

    • Cong Liu
    • Hao Gao
    • Dingyu Xing
    Research
    Nature Physics
    Volume: 15, P: 1065-1070
  • The Cancer Genome Atlas Research Network reports an integrative analysis of more than 400 samples of clear cell renal cell carcinoma based on genomic, DNA methylation, RNA and proteomic characterisation; frequent mutations were identified in the PI(3)K/AKT pathway, suggesting this pathway might be a potential therapeutic target, among the findings is also a demonstration of metabolic remodelling which correlates with tumour stage and severity.

    • Chad J. Creighton
    • Margaret Morgan
    • Heidi J. Sofia.
    ResearchOpen Access
    Nature
    Volume: 499, P: 43-49
  • Eusociality evolved independently in Hymenoptera and in termites. Here, the authors sequence genomes of the German cockroach and a drywood termite and provide insights into the evolutionary signatures of termite eusociality.

    • Mark C. Harrison
    • Evelien Jongepier
    • Erich Bornberg-Bauer
    ResearchOpen Access
    Nature Ecology & Evolution
    Volume: 2, P: 557-566
    • Richard W. Michelmore
    • Douglas V. Shaw
    News & Views
    Nature
    Volume: 335, P: 672-673
  • Ancient valleys suggest a warm early Mars where liquid water flowed, but a greenhouse effect strong enough to offset a dim early Sun has been difficult to explain. Climate simulations suggest that sufficient concentrations of the greenhouse gases CO2 and H2 — outgassed during volcanic eruptions — could have warmed Mars above water’s freezing point.

    • Ramses M. Ramirez
    • Ravi Kopparapu
    • James F. Kasting
    Research
    Nature Geoscience
    Volume: 7, P: 59-63
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • p14ARF drives NPM1 phase separation and forms meso-scale assemblies that limit NPM1 dynamics. Here the authors show that p14ARF hydrophobic residues enhance NPM1 phase separation, promote p14ARF nucleolar partitioning, nucleolar NPM1 immobilization, and reduce cell viability.

    • Eric Gibbs
    • Qi Miao
    • Richard Kriwacki
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • High-resolution imaging techniques show that aromatic amino acids such as tryptophan formed abiotically and were subsequently preserved at depth beneath the Atlantis Massif of the Mid-Atlantic Ridge, supporting the hydrothermal theory for the origin of life.

    • Bénédicte Ménez
    • Céline Pisapia
    • Matthieu Réfrégiers
    Research
    Nature
    Volume: 564, P: 59-63
  • Here, the analysis of 'HapMap 3' is reported — a public data set of genomic variants in human populations. The resource integrates common and rare single nucleotide polymorphisms (SNPs) and copy number polymorphisms (CNPs) from 11 global populations, providing insights into population-specific differences among variants. It also demonstrates the feasibility of imputing newly discovered rare SNPs and CNPs.

    • David M. Altshuler
    • Richard A. Gibbs
    • Jean E. McEwen
    Research
    Nature
    Volume: 467, P: 52-58