Extended Data Fig. 4: TT-Mars evaluation of Hapdup and Sniffles2 calls. | Nature Methods

Extended Data Fig. 4: TT-Mars evaluation of Hapdup and Sniffles2 calls.

From: Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

Extended Data Fig. 4

SV calls from Hapdup and Sniffles2 were compared to the assemblies from the HPRC for HG002 (top), HG00733 (middle), and HG02723 (bottom) with TT-Mars. The calls were either validated by the alignment (green), not validated (orange), or couldn’t be annotated by TT-Mars (blue). We evaluated all SVs across the genome (left), as well as the subset of SVs that don’t overlap centromeres or segmental duplications larger than 10 Kbp (right).

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