Extended Data Fig. 2: Ideogram of an assembly of CHM1 aligned to T2T-CHM13.
From: Increased mutation and gene conversion within human segmental duplications
The ideogram depicts the contiguity (alternating blue and orange contigs) of a CHM1 assembly generated by Verkko as compared to T2T-CHM13. The overall contig N50 is 105.2 Mbp providing near chromosome arm contiguity with the exception of breaks at the centromere (red) and other large satellite arrays. Because the sequence is derived from a monoploid complete hydatidiform mole, there is no opportunity for assembly errors due to inadvertent haplotype switching.