Table 1 Description of selected DNA-based signatures
Description | DNA-based signatures | Original RNA-based signatures | |||
|---|---|---|---|---|---|
Name | DNA segments | N genes | PMID | References | |
Research-based Mammaprint | NKI70 | 149 | 60 | 11823860 | |
Estrogen-regulated gene expression | Scorr_IE | 166 | 754 | 16505416 | |
TP53 mutational status | P53_Mut_Correlation | 240 | 48 | 17150101 | |
Genes up-regulated in Basal-like | GSEA_SMID_Basal_UP | 232 | 648 | 18451135 | |
Proliferation/cell cycle | Wirapati_Proliferation | 112 | 355 | 18662380 | |
Retinoblastoma loss of heterozygosity | RB-LOH | 236 | 345 | 18782450 | |
Research-based PAM50 Luminal A | Scorr_LumA_Correlation | 197 | 50 | 19204204 | |
Research-based PAM50 Luminal B | Scorr_LumB_Correlation | 184 | 50 | 19204204 | |
Research-based PAM50 HER2-enriched | Scorr_Her2_Correlation | 66 | 50 | 19204204 | |
Research-based PAM50 Basal-like | Scorr_Basal_Correlation | 229 | 50 | 19204204 | |
Glycolysis gene expression | Glycolysis_Signature | 123 | 5 | 19291283 | |
Luminal-related gene expresion | Luminal_Cluster | 236 | 78 | 21214954 | |
HER2 amplicon gene expression | HER2_Amplicon | 34 | 19 | 21214954 | |
TP53 mutational status in ER + | P53_ER + | 89 | 29 | 21248301 | |
P53null luminal mouse model | MM_p53null_Luminal | 166 | 224 | 24220145 | |
MYC amplified mouse model | MM_Myc | 184 | 228 | 24220145 | |
Estrogen receptor signaling | GP7_Estrogen_signaling | 255 | 701 | 25109877 | |