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Call for papers - Genomics of symbiosis

Guest Editors

Anna Michalik, PhD, Jagiellonian University, Poland
Shingo Miyauchi, PhD, Okinawa Institute of Science and Technology, Japan

Submission Status: Open   |   Submission Deadline: 15 August 2025

BMC Genomics is calling for submissions to our Collection Genomics of symbiosis, focusing on the genetic and molecular mechanisms underlying these complex interactions. We welcome submissions that explore the genomics of symbiotic relationships throughout all domains of life, as well as the evolutionary implications of these collaborations. By advancing our understanding of symbiosis, we aim to uncover new insights that can inform ecological and biotechnological applications.

New Content ItemThis Collection supports and amplifies research related to SDG 3: Good Health & Well-Being, SDG 14: Life Below Water, SDG 15: Life on Land.

Meet the Guest Editors

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Anna Michalik, PhD, Jagiellonian University, Poland

Dr Anna Michalik is an Associate Professor at the Jagiellonian University in Krakow, Poland, where she completed her PhD in 2011. Over her career, Dr Michalik has authored more than 40 research articles on symbiosis and insect developmental biology. Her work combines molecular biology, genomics, and microscopy to uncover the intricate relationships between insects and their microbial symbionts.
Dr Michalik’s research primarily focuses on the complex dynamics of insect symbioses. She investigates a range of topics, including the composition of insect microbiomes across various species, the comparative genomics of symbiont genomes, and symbiont distribution and transmission across insect generations. Her work involves high-throughput sequencing methods to examine the genetic diversity and evolution of insect-associated microbiota, as well as advanced microscopic techniques for visualizing and analysing these interactions at cellular and structural levels and, therefore, providing a deeper understanding of how these symbiotic relationships impact insect biology and ecology.

Shingo Miyauchi, PhD, Okinawa Institute of Science and Technology, Japan

Dr Miyauchi is a senior biologist/data scientist with expertise in fungal genomics, particularly mycorrhizal species. For nearly a decade, he has played a pivotal role in analysing genomic data and driving international fungal genome sequencing projects. With the surge of genome data in biology, Dr Miyauchi meets the demand for biological interpretation through his innovative pipelines, Visual Omics Tools. He excels at extracting and visualizing significant patterns within complex biological data. Currently, he leads a marine and deep-sea fungal genome sequencing project in collaboration with global partners. His work expands the understanding of plant-microbe interactions and the dynamics of forest and marine ecosystems. His goal is to contribute to solutions for global warming and environmental challenges. Education: MSc, the University of Auckland New Zealand; PhD, Macquarie University Australia. Postdoctoral work: INRAE France; the Max Plank Institute Germany.

About the Collection

BMC Genomics is calling for submissions to our Collection on Genomics of symbiosis. The study of symbiosis, particularly the genomic underpinnings of these complex interactions, has emerged as a pivotal area of research in understanding the relationships between organisms. Symbiosis encompasses a range of interactions, from mutualism to parasitism, and is crucial for the survival and evolution of many species, including both invertebrates and vertebrates. A well-documented example is the mutualistic association between sea anemones and clownfish, where the anemones provide protection for the fish, and the fish, in turn, help to ward off predators and parasites.

Recent advancements in genomic technologies have enabled researchers to dissect the genetic and molecular mechanisms that facilitate these interactions, revealing the intricate networks of collaboration between host organisms and their partners. The advent of next-generation sequencing technologies, which offer significantly lower costs compared to traditional Sanger sequencing, along with much higher throughput, has made it possible to sequence genomes at an unprecedented scale, leading to a rapid increase in available genomic data. This influx of genomic information has accelerated our understanding of symbiotic relationships by allowing researchers to explore the diversity of symbiotic organisms across species, uncover novel symbiotic genes, and gain insights into the evolutionary dynamics of these interactions.

Advancing our collective understanding of the genomics of symbiosis is essential for several reasons. It not only enhances our knowledge of ecological dynamics and evolutionary processes but also has significant implications for biotechnology, agriculture, and medicine. Important advances in this field include the identification of key genes involved in symbiotic relationships and the elucidation of metabolic pathways that support mutualistic interactions. These insights can inform strategies for harnessing beneficial symbioses in various applications, from improving crop resilience to developing novel therapeutics. For example, understanding the symbiotic relationship between legumes and nitrogen-fixing bacteria has led to advances in sustainable agriculture by promoting natural nitrogen fertilization, reducing the need for chemical fertilizers and enhancing crop productivity.

The growing availability of genomic data through advanced sequencing technologies is likely to reveal new, previously unrecognized symbiotic relationships. A recent example is the discovery of Syntretus perlmani, a parasitoid wasp that parasitizes adult fruit flies and manipulates the biology of its host to support its offspring's development. By adding more genomes to the databases, researchers can identify novel genetic markers and pathways that may indicate undiscovered associations between species. This could lead to breakthroughs in various fields, from ecology to biotechnology.

Potential topics of interest include, but are not limited to:

  • Genomic insights into mutualism
  • Bacterial symbionts in invertebrates
  • Evolutionary genomics of symbiotic relationships
  • Symbiotic fungi and their hosts
  • Genomic adaptations in vertebrate symbiosis
  • Genomic analysis of endosymbiotic relationships
  • The role of horizontal gene transfer in symbiotic interactions
  • Genomic adaptations to environmental stress in symbiotic systems
  • The impact of climate change on symbiotic relationships and their genomic responses
  • Comparative genomics of symbiotic organisms across different ecosystems
  • The role of epigenetics in symbiotic relationships
     

This Collection supports and amplifies research related to SDG 3: Good Health & Well-Being, SDG 14: Life Below WaterSDG 15: Life on Land.

Image credit: © ultramarinfoto / Getty Images / iStock

Submission Guidelines

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This Collection welcomes submission of original Research Articles. Should you wish to submit a different article type, please read our submission guidelines to confirm that type is accepted by the journal. Articles for this Collection should be submitted via our submission system, Snapp. During the submission process you will be asked whether you are submitting to a Collection, please select "Genomics of symbiosis" from the dropdown menu.

Articles will undergo the journal’s standard peer-review process and are subject to all of the journal’s standard policies. Articles will be added to the Collection as they are published.

The Editors have no competing interests with the submissions which they handle through the peer review process. The peer review of any submissions for which the Editors have competing interests is handled by another Editorial Board Member who has no competing interests.

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