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Description
I am self-assigning me for most tutorials shared in Slack in GutHub for longevity, happy to share the tutorials write up if someone offers to contribute as well.
Tutorials that shouldn't be forgotten after the codeathon:
- github I: Contribution etiquette issues for tracking tasks, pull requests (authors and reviewers perspective)
- github II: Command line git commands for developing and pushing code to githhub. How to resolve conflicts and keep branches in sync when many people contribute.
- conda: Basic commands for managing dependencies, including creating, activating envs and finding and installing packages
- docker: Finding, building and using docker images/containers. Setting up a DockerHub account, docker login from the command line. Template duo of
Dockerfile
,environment.yml
- zenodo: Creating a record and updating the record with revisions from the user interface. Retrieving https links for all files in a zenodo record
- nextflow: The anatomy of a Nextflow process. Resources for further reading, such as Nextflow patterns. How to define number of cpus or container per process type.