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Description
I am trying to show TEs around inversion breakpoints. Two of my inversions are extremely short so the TE depiction for other inversions is not visible. how can I get around this issue?
This is my code
ggplot(dfg, aes(xmin = start, xmax = end, y = Gene, fill = element,
forward = orientation)) +
geom_gene_arrow() +
facet_wrap(~ Gene, scales = "free", ncol = 1) +
scale_fill_brewer(palette = "Set3") +
geom_blank(data = dfg, aes(forward = 1)) +
theme_genes()
for example, for gene4, I have many TEs, but due to scale they are not visible
gene4 Breakpoint 3994117 3994117 1
gene4 Breakpoint 11174374 11174375 1
gene4 TE1 11174718 11174764 0
gene4 TE2 11176065 11176105 1
gene4 TE3 11176070 11176111 0
gene4 TE4 11176124 11176330 1
gene4 TE5 11176616 11176706 1
Thanks
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