cgroup-lite was added as a dependency with #978, but this package is not available on Debian, which provides only cgroup-bin. As a result, 0.3.15 is the most recent version of Dokku that can be installed on Debian.
I believe that simply replacing cgroup-lite with cgroup-bin should fix the issue on both systems; this is why the official Docker package uses the latter.
Related: #976.