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Commits on Mar 13, 2025

• Update README.md

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Commits on Feb 7, 2025

• update plotting scripts

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Commits on Feb 5, 2025

• Update README.md

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• update

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• add clinker script

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• Merge branch 'main' of https://github.com/Rowena-h/GaeumannomycesGenomics into main

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  ff2e294

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• tidy up

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• standardise gene IDs

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• fix input strings

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• reorder plot

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• add flag for partial genes

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• Update schematic.png

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Commits on Aug 14, 2024

• add sequence checks for after merging

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Commits on Jul 8, 2024

• update

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Commits on May 16, 2024

• fix paths

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• add TE permanova

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• remove mitochondrial annotations

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• fix paths

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• add high confidence gff filter script

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  d86d462

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• fix path typo

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• update for high confidence gff

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Commits on Feb 27, 2024

• fix ifelse

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Commits on Feb 16, 2024

• Update README.md

  Rowena-h

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Commits on Jan 23, 2024

• fix CAZyme filtering

  Rowena-h

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Commits on Jan 16, 2024

• remove test

  Rowena-h

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• Update README.md

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• update NCBI submission scripts

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  91e7b2d

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Commits on Jan 12, 2024

• add annotation update

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  6e339eb

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Commits on Dec 21, 2023

• remove duplicate code

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Commits on Dec 20, 2023

• Update README.md

  Rowena-h

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  6ac7f7e

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• Update README.md

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  62baed9

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• update plot

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Commits on Dec 19, 2023

• tidy up

  Rowena-h

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Commits on Dec 18, 2023

• Update README.md

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• 002_readsmap_filter.sh

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