Hi,

I ran the pipeline as follows:

caper hpc submit /home/opt/chip-seq-pipeline2/chip.wdl -i chip_cntl.json --singularity --leader-job-name cntl --file-db /gpfs0/home1/lab/analyses

making sure that I have the --file-db. Now, I wanted to resume the processes using the same command but it seemed to restart from the beginning. I see task=chip.align:0 when the last task previously done was task=chip.idr:1

Is this not the correct way to resume the chipseq pipeline?

Thanks!