As a bioinfo person, I want to install environments in conda without any error.
Problem:
conda 4.5.xx has a bug while resolving environments: conda/conda#7780
Steps to reproduce
- conda env create -f my_conda_env.yaml --quite --name some_conda_env_name
Example conda_env.yaml
channels:
- bioconda
- conda-forge
dependencies:
- python=3.6
- pip=9.0.3
- snakemake=4.8.0
- r-data.table=1.11.4
- r-optparse=1.6.0
- r-deconstructsigs=1.8.0.1
- r-reshape2=1.4.3
- bioconductor-bsgenome=1.48.0
- bioconductor-bsgenome.hsapiens.ucsc.hg19=1.4.0
and this is the command: conda env create -f abovefile.yaml --quiet --name S_test_190524_HFA
Expected outcome / suggested solution:
A conda environment to be created with this name: some_conda_env_name
Questions:
Q: Does the same problem occur for tea?
A: Yes.
What needs to be done on the planning meeting:
- Estimate storypoints
- Remember to add label PBL Teamname
See https://github.com/Clinical-Genomics/development/blob/master/git/issue-reports.md for more!