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Commits on Aug 16, 2019

• Merge pull request #133 from biowdl/BIOWDL-302

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  rhpvorderman

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• check all wdls

  rhpvorderman

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  5badadc

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• womtool validate with newest version thanks to conda

  rhpvorderman

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• add comment

  rhpvorderman

  committed
  61b586f

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• update changelog

  rhpvorderman

  committed
  eed1d6f

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• simplify cutadapt interface

  rhpvorderman

  committed
  8e3e8a5

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• Merge pull request #132 from biowdl/BIOWDL-302

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  DavyCats

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Commits on Aug 15, 2019

• update changelog

  rhpvorderman

  committed
  05977e6

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• account for big vmem usage in mutect

  rhpvorderman

  committed
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• remove default adapter for cutadapt

  rhpvorderman

  committed
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• remove default adapter

  rhpvorderman

  committed
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Commits on Aug 13, 2019

• Merge pull request #129 from biowdl/BIOWDL-292

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  rhpvorderman

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• Merge branch 'develop' into BIOWDL-292

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Commits on Aug 12, 2019

• Merge pull request #131 from biowdl/JasperBoom-patch-dockerImage

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  DavyCats

  authored
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• Merge branch 'develop' into JasperBoom-patch-dockerImage

  JasperBoom

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• Merge pull request #130 from Amfgcp/fixes-run-shark

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  DavyCats

  authored
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• Add update dockerTag to dockerImage to CHANGELOG.md

  JasperBoom

  authored
  b37a58d

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• Update dockerTag to dockerImage

  JasperBoom

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  a008c17

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• update to run in Shark: memory values and no "-o pipefail"

  Amfgcp

  committed
  0ca15e1

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• update changelog

  rhpvorderman

  committed
  c75f620

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• update fastqsplitter

  rhpvorderman

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• unify picard

  rhpvorderman

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Commits on Aug 6, 2019

• Merge pull request #128 from Amfgcp/m2-gatk4.1.2.0-updates

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  DavyCats

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• Merge branch 'm2-gatk4.1.2.0-updates' of https://github.com/Amfgcp/tasks into m2-gatk4.1.2.0-updates

  Amfgcp

  committed
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• update legibility for the CombineVariants command

  Amfgcp

  committed
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• Merge branch 'develop' into m2-gatk4.1.2.0-updates

  Amfgcp

  authored
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Commits on Aug 5, 2019

• update changelog

  Amfgcp

  committed
  05fda96

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• fix FilterMutectCalls not creating expected output folder

  Amfgcp

  committed
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• fix command according to style guideline

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  Amfgcp

  committed
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• add GATK3 CombineVariants as a task

  Amfgcp

  committed
  03232d6

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• update ModifyStrelka to also add "GT" header

  Amfgcp

  committed
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Commits on Aug 4, 2019

• add modify_Strelka as task

  Amfgcp

  committed
  3565efa

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• update changelog

  Amfgcp

  committed
  d1522b2

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• add GATK FilterMutectCalls as a task

  Amfgcp

  committed
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Commits on Aug 2, 2019

• add GATK CalculateContamination as a task

  Amfgcp

  committed
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