这是indexloc提供的服务，不要输入任何密码

There is a newer version of the record available.

Published March 20, 2025 | Version 1.9.0
Software Open

nipy/nipype: 1.9.0

Creators

  • 1. Department of Psychology, Stanford University
  • 2. Stanford University
  • 3. MIT
  • 4. Independent
  • 5. The University of Iowa
  • 6. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
  • 7. Developer
  • 8. Klinikum rechts der Isar, TUM. ACPySS
  • 9. Dartmouth College: Hanover, NH, United States
  • 10. UC Berkeley
  • 11. University of California, San Francisco
  • 12. Mayo Clinic, Neurology, Rochester, MN, USA
  • 13. CEA
  • 14. Florida International University
  • 15. University of Iowa
  • 16. Department of Electrical and Computer Engineering, Johns Hopkins University
  • 17. Molecular Imaging Research Center, CEA, France
  • 18. UC Berkeley - UCSF Graduate Program in Bioengineering
  • 19. Institute for Biomedical Engineering, ETH and University of Zurich
  • 20. The Centre for Addiction and Mental Health
  • 21. UC San Diego
  • 22. Holland Bloorview Kids Rehabilitation Hospital
  • 23. Dartmouth College
  • 24. University of Texas at Austin
  • 25. Shattuck Lab, UCLA Brain Mapping Center
  • 26. Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 27. National Institutes of Health
  • 28. Neuroscience Program, University of Iowa
  • 29. Concordia University
  • 30. CIBIT, UC
  • 31. Otto-von-Guericke-University Magdeburg, Germany
  • 32. Child Mind Institute
  • 33. SRI International
  • 34. Charitè Universitätsmedizin Berlin, Germany
  • 35. Athena EPI, Inria Sophia-Antipolis
  • 36. Vrije Universiteit, Amsterdam
  • 37. Sagol School of Neuroscience, Tel Aviv University
  • 38. Indiana University, IN, USA
  • 39. University College London
  • 40. University of Sydney
  • 41. National Institute of Mental Health
  • 42. INRIA
  • 43. Charite Universitatsmedizin Berlin, Germany
  • 44. ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.
  • 45. Penn Statistics in Imaging and Visualization Endeavor, University of Pennsylvania
  • 46. Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging
  • 47. The University of Washington eScience Institute
  • 48. Washington University in St Louis
  • 49. Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany
  • 50. Montreal Neurological Institute and Hospital
  • 51. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
  • 52. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
  • 53. Medical College of Wisconsin
  • 54. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 55. Department of Psychology, University of Bielefeld, Bielefeld, Germany.
  • 56. The University of Sydney
  • 57. National University Singapore
  • 58. UniversityHospital Heidelberg, Germany
  • 59. Department of Neurology, BG-University Hospital Bergmannsheil Bochum, Germany
  • 60. Nathan s Kline institute for psychiatric research
  • 61. ARAMIS Lab, Paris Brain Institute
  • 62. NIMH IRP
  • 63. University of Washington
  • 64. University of Zurich
  • 65. Neurospin/Unicog/Inserm/CEA
  • 66. Department of Psychology, Stanford University; Parietal, INRIA
  • 67. MPI CBS Leipzig, Germany
  • 68. 1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
  • 69. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
  • 70. Azienda Ospedaliero-Universitaria di Modena
  • 71. Duke University
  • 72. CNRS, UMS3552 IRMaGe
  • 73. Max Planck Institute for Human Cognitive and Brain Sciences
  • 74. Leibniz Institute for Neurobiology
  • 75. Mayo Clinic
  • 76. Yale University; New Haven, CT, United States
  • 77. University of Illinois Urbana Champaign
  • 78. Korea Advanced Institute of Science and Technology
  • 79. University of Pennsylvania
  • 80. Harvard University - Psychology
  • 81. GIGA Institute
  • 82. Boston University
  • 83. Lund University
  • 84. University of Newcastle, Australia
  • 85. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
  • 86. German Institute for International Educational Research
  • 87. Dept of Medical Biophysics, Univeristy of Western Ontario
  • 88. Flywheel.io, Minneapolis, MN, USA.
  • 89. California Institute of Technology
  • 90. Research Centre Juelich
  • 91. Weill Cornell Medicine
  • 92. NIMH, Scientific and Statistical Computing Core
  • 93. University of Pittsburgh
  • 94. Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
  • 95. University of Amsterdam
  • 96. Department of Neuropsychiatry, University of Pennsylvania
  • 97. Technical University Munich
  • 98. National Institute on Aging, Baltimore, MD, USA
  • 99. Insitiute and Polyclinc for Diagnostic and Interventional Neuroradiology, University Hospital Carl Gustav Carus, Dresden, Germany
  • 100. Institute of Neuroinformatics, ETH/University of Zurich
  • 101. Enigma Biomedical Group
  • 102. Department of Psychological and Brain Sciences, Dartmouth College
  • 103. MPI-CBS; McGill University
  • 104. Vrije Universiteit Amsterdam
  • 105. Child Mind Institute / Nathan Kline Institute
  • 106. BarcelonaBeta Brain Research Center
  • 107. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
  • 108. INRIA-Saclay, Team Parietal
  • 109. Institute of Imaging & Computer Vision, RWTH Aachen University, Germany
  • 110. University of Tübingen and MPI for Biological Cybernertics
  • 111. University of Waterloo
  • 112. University of Helsinki
  • 113. Universidad de Guadalajara
  • 114. ARAMIS Lab
  • 115. The University of Texas at Austin
  • 116. Consolidated Department of Psychiatry, Harvard Medical School
  • 117. University of Cambridge
  • 118. University of Applied Sciences and Arts Northwestern Switzerland
  • 119. Stanford University and the University of Chicago
  • 120. Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA, USA
  • 121. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
  • 122. Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
  • 123. MIT, HMS

Description

Release Notes

New feature release in the 1.9.x series.

What's Changed

  • FIX: Remove exists=True from fsl.MotionOutliers output that might not exist (https://github.com/n
  • FIX: Improve evaluate_connect_function errors across Python versions (https://github.com/nipy/nip
  • FIX: Changed inheritance of TensorMetricsInputSpec (https://github.com/nipy/nipype/pull/3663)
  • FIX: Add cropped files to dcm2niix output (https://github.com/nipy/nipype/pull/3609)
  • FIX: Deduplicate dcm2niix output (https://github.com/nipy/nipype/pull/3610)
  • FIX: Parse commas in CSV fields (https://github.com/nipy/nipype/pull/3637)
  • FIX: MRTrix3 change inputs position for MRTransform (https://github.com/nipy/nipype/pull/3611)
  • FIX: Use out_prefix instead of "w" in spm.Normalize12 (https://github.com/nipy/nipype/pull/3600)
  • FIX: Fix typo in spm.Normalize12 process (https://github.com/nipy/nipype/pull/3599)
  • FIX: DWIPreproc issue (https://github.com/nipy/nipype/pull/3596)
  • FIX: DWIPreproc issue (https://github.com/nipy/nipype/pull/3596)
  • FIX: Fix bugs with fsl_out=True and lta_out=True (https://github.com/nipy/nipype/pull/358
  • FIX: Test failures (https://github.com/nipy/nipype/pull/3587)
  • FIX: update merge_imgs input type of dcm2niix Node (https://github.com/nipy/nipype/pull/3548)
  • FIX: update sample_random_points and random_seed type of ProbTrackXBaseInputSpec (https://github.
  • FIX: update self.inputs.optimization in outputs for GTMPVC (https://github.com/nipy/nipype/pull/3
  • ENH: Support HDF5 (mat 7.3) SPM.mat files (https://github.com/nipy/nipype/pull/3650)
  • ENH: FILMGLS gifti output support in surface mode (https://github.com/nipy/nipype/pull/3652)
  • ENH: Added available inputs for MRTrix3's 5ttgen (https://github.com/nipy/nipype/pull/3658)
  • ENH: Add functions to mrtrix3 interface (https://github.com/nipy/nipype/pull/3613)
  • ENH: Update PETsurfer interface (https://github.com/nipy/nipype/pull/3602)
  • ENH: Add 'hsvs' option to 5ttgen + mrtransform fix (https://github.com/nipy/nipype/pull/3630)
  • ENH: add STC PVC to PETPVC interface (https://github.com/nipy/nipype/pull/3634)
  • ENH: Add GenericLabel to ANTS ApplyTransforms. (https://github.com/nipy/nipype/pull/3617)
  • ENH: Issue 3553 add mvecs to dcm2niix (https://github.com/nipy/nipype/pull/3554)
  • ENH: add contrast outputs for EstimatedModel (https://github.com/nipy/nipype/pull/3577)
  • ENH: Issue 3345: Adding FreeSurfer longitudinal interfaces (https://github.com/nipy/nipype/pull/3
  • ENH: Enable SPM voxel-based FDR (https://github.com/nipy/nipype/pull/3558)
  • REF: Replace deprecated pkgutil.find_loader with importlib.util.find_spec (https://github.com/nip
  • REF: io.open() → open() (https://github.com/nipy/nipype/pull/3575)
  • REF: Stop using deprecated import internally (https://github.com/nipy/nipype/pull/3561)
  • DOC: Patch doc/conf.py to work with latest ReadTheDocs (https://github.com/nipy/nipype/pull/3691)
  • DOC/FIX: Fix wrong name, should be al_ea (https://github.com/nipy/nipype/pull/3629)
  • DOC: Fix typos newly found by codespell (https://github.com/nipy/nipype/pull/3606)
  • STY: Apply ruff/pycodestyle rules (E) (https://github.com/nipy/nipype/pull/3689)
  • STY: Apply ruff rules (RUF) again (https://github.com/nipy/nipype/pull/3688)
  • STY: Apply ruff/Pyflakes rules (F) (https://github.com/nipy/nipype/pull/3681)
  • STY: Apply ruff/Perflint rules (PERF) again (https://github.com/nipy/nipype/pull/3687)
  • STY: Apply ruff/flake8-comprehensions preview rules (C4) (https://github.com/nipy/nipype/pull/368
  • STY: Apply ruff/flake8-simplify rules (SIM) (https://github.com/nipy/nipype/pull/3676)
  • STY: Apply ruff/flake8-bugbear rules (B) (https://github.com/nipy/nipype/pull/3671)
  • STY: Apply ruff/flake8-comprehensions rules (C4) (https://github.com/nipy/nipype/pull/3680)
  • STY: Apply ruff/Perflint rules (PERF) (https://github.com/nipy/nipype/pull/3674)
  • STY: Apply ruff/flake8-implicit-str-concat rules (ISC) (https://github.com/nipy/nipype/pull/3679)
  • STY: Apply ruff/flake8-pie rules (PIE) (https://github.com/nipy/nipype/pull/3678)
  • STY: Apply ruff/flake8-raise rules (RSE) (https://github.com/nipy/nipype/pull/3677)
  • STY: Apply ruff/flynt rules (FLY) (https://github.com/nipy/nipype/pull/3675)
  • STY: Apply ruff rules (RUF) (https://github.com/nipy/nipype/pull/3673)
  • STY: Codespell (https://github.com/nipy/nipype/pull/3672)
  • STY: Apply ruff/refurb rules (https://github.com/nipy/nipype/pull/3648)
  • STY: Apply ruff/pyupgrade rules (https://github.com/nipy/nipype/pull/3647)
  • STY: Adjusted variable names for clarity and codespell false positives (https://github.com/nipy/n
  • STY: Remove duplicated trait in EddyOutputSpec (https://github.com/nipy/nipype/pull/3568)
  • STY: Black edits (https://github.com/nipy/nipype/pull/1)
  • MNT: Replace deprecated imghdr (https://github.com/nipy/nipype/pull/3659)
  • MNT: Use regular ".now" instead of ".utcnow" with UTC zone (https://github.com/nipy/nipype/pull/3
  • MNT: Apply assorted repo-review rules (https://github.com/nipy/nipype/pull/3682)
  • MNT: Drop traits upper bound (https://github.com/nipy/nipype/pull/3685)
  • MNT: Configure dependabot to update GH workflows (https://github.com/nipy/nipype/pull/3597)
  • MNT: Replace deprecated locale.getdefaultlocale (https://github.com/nipy/nipype/pull/3590)
  • MNT: Require Python 3.8+, auto-upgrade syntax (https://github.com/nipy/nipype/pull/3588)
  • CI: Test Python 3.12 support (https://github.com/nipy/nipype/pull/3638)
  • CI: Test on Python 3.11 (https://github.com/nipy/nipype/pull/3589)
  • CI/FIX: configure codespell, add workflow, typos fixed (https://github.com/nipy/nipype/pull/3549)

New Contributors

  • @asmacdo made their first contribution in https://github.com/nipy/nipype/pull/3561
  • @yibeichan made their first contribution in https://github.com/nipy/nipype/pull/3568
  • @mmbannert made their first contribution in https://github.com/nipy/nipype/pull/3558
  • @l-espana made their first contribution in https://github.com/nipy/nipype/pull/3529
  • @jadecci made their first contribution in https://github.com/nipy/nipype/pull/3583
  • @manuegrx made their first contribution in https://github.com/nipy/nipype/pull/3577
  • @pvelasco made their first contribution in https://github.com/nipy/nipype/pull/3554
  • @stebo85 made their first contribution in https://github.com/nipy/nipype/pull/3629
  • @zachlindsey made their first contribution in https://github.com/nipy/nipype/pull/3637
  • @teanijarv made their first contribution in https://github.com/nipy/nipype/pull/3630
  • @lbutry made their first contribution in https://github.com/nipy/nipype/pull/3613
  • @penguinpee made their first contribution in https://github.com/nipy/nipype/pull/3659
  • @bogpetre made their first contribution in https://github.com/nipy/nipype/pull/3652
  • @scott-huberty made their first contribution in https://github.com/nipy/nipype/pull/3655
  • @adamnarai made their first contribution in https://github.com/nipy/nipype/pull/3650
  • @beausievers made their first contribution in https://github.com/nipy/nipype/pull/1428

Full Changelog: https://github.com/nipy/nipype/compare/1.8.6...1.9.0

Files

nipy/nipype-1.9.0.zip

Files (3.8 MB)

Name Size Download all
md5:30cc02973054ad124348b1c831b05a72
3.8 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/nipy/nipype/tree/1.9.0 (URL)

Software

Repository URL
https://github.com/nipy/nipype