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BibTeX records: Erik Meijering
@article{DBLP:journals/air/XuKSM25,
author = {Yiwen Xu and
Tariq M. Khan and
Yang Song and
Erik Meijering},
title = {Edge deep learning in computer vision and medical diagnostics: a comprehensive
survey},
journal = {Artif. Intell. Rev.},
volume = {58},
number = {3},
pages = {93},
year = {2025},
url = {https://doi.org/10.1007/s10462-024-11033-5},
doi = {10.1007/S10462-024-11033-5},
timestamp = {Mon, 10 Feb 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/air/XuKSM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/MondolMGBSM25,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Peter H. Graham and
Lois Browne and
Arcot Sowmya and
Erik Meijering},
title = {{GRAPHITE:} Graph-based interpretable tissue examination for enhanced
explainability in breast cancer histopathology},
journal = {Comput. Biol. Medicine},
volume = {197},
pages = {111106},
year = {2025},
url = {https://doi.org/10.1016/j.compbiomed.2025.111106},
doi = {10.1016/J.COMPBIOMED.2025.111106},
timestamp = {Sun, 02 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cbm/MondolMGBSM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eaai/KhanLIM25,
author = {Tariq Mahmood Khan and
Dawn Lin and
Shahzaib Iqbal and
Erik Meijering},
title = {A novel approach to skin lesion segmentation using transformer attention
and focal modulation},
journal = {Eng. Appl. Artif. Intell.},
volume = {162},
pages = {112603},
year = {2025},
url = {https://doi.org/10.1016/j.engappai.2025.112603},
doi = {10.1016/J.ENGAPPAI.2025.112603},
timestamp = {Sun, 09 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/eaai/KhanLIM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ZhuBSM25,
author = {Jiayi Zhu and
Bart Bolsterlee and
Yang Song and
Erik Meijering},
title = {Improving cross-domain generalizability of medical image segmentation
using uncertainty and shape-aware continual test-time domain adaptation},
journal = {Medical Image Anal.},
volume = {101},
pages = {103422},
year = {2025},
url = {https://doi.org/10.1016/j.media.2024.103422},
doi = {10.1016/J.MEDIA.2024.103422},
timestamp = {Sat, 25 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/ZhuBSM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/paa/HuMS25,
author = {Yan Hu and
Erik Meijering and
Yang Song},
title = {Multiscope topology learning with conditional updating for airway
segmentation},
journal = {Pattern Anal. Appl.},
volume = {28},
number = {2},
pages = {104},
year = {2025},
url = {https://doi.org/10.1007/s10044-025-01480-3},
doi = {10.1007/S10044-025-01480-3},
timestamp = {Mon, 02 Jun 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/paa/HuMS25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/IqbalKNNM25,
author = {Shahzaib Iqbal and
Tariq Mahmood Khan and
Syed Saud Naqvi and
Asim Naveed and
Erik Meijering},
title = {TBConvL-Net: {A} hybrid deep learning architecture for robust medical
image segmentation},
journal = {Pattern Recognit.},
volume = {158},
pages = {111028},
year = {2025},
url = {https://doi.org/10.1016/j.patcog.2024.111028},
doi = {10.1016/J.PATCOG.2024.111028},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pr/IqbalKNNM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tim/ShenWLWDZM25,
author = {Wenting Shen and
Yaonan Wang and
Min Liu and
Jiazheng Wang and
Renjie Ding and
Zhe Zhang and
Erik Meijering},
title = {Multiview Integration Network for Multitask Robotic Surgical Scene
Analysis},
journal = {{IEEE} Trans. Instrum. Meas.},
volume = {74},
pages = {1--13},
year = {2025},
url = {https://doi.org/10.1109/TIM.2025.3568524},
doi = {10.1109/TIM.2025.3568524},
timestamp = {Sun, 06 Jul 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tim/ShenWLWDZM25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/LuoM025,
author = {Yafei Luo and
Erik Meijering and
Yang Song},
title = {Enhancing Change Detection in Remote Sensing: Integrating Synthetic
Data with Semi-Supervised Learning},
booktitle = {2025 {IEEE} International Conference on Acoustics, Speech and Signal
Processing, {ICASSP} 2025, Hyderabad, India, April 6-11, 2025},
pages = {1--5},
publisher = {{IEEE}},
year = {2025},
url = {https://doi.org/10.1109/ICASSP49660.2025.10889224},
doi = {10.1109/ICASSP49660.2025.10889224},
timestamp = {Sat, 15 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icassp/LuoM025.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/percom/GalaKMGVM025,
author = {Dev Gala and
Jinam Keniya and
Harsha Varun Marisetty and
Manik Gupta and
Tanmay Tulsidas Verlekar and
Erik Meijering and
Ashwin Srinivasan},
title = {Accelerating Medical Image Analysis on Edge Devices: {A} Study with
MobileOne Architecture},
booktitle = {{IEEE} International Conference on Pervasive Computing and Communications
Workshops and other Affiliated Events, PerCom 2025 - Workshops, Washington
DC, USA, March 17-21, 2025},
pages = {158--163},
publisher = {{IEEE}},
year = {2025},
url = {https://doi.org/10.1109/PerComWorkshops65533.2025.00058},
doi = {10.1109/PERCOMWORKSHOPS65533.2025.00058},
timestamp = {Mon, 30 Jun 2025 17:44:36 +0200},
biburl = {https://dblp.org/rec/conf/percom/GalaKMGVM025.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2501-04206,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Peter H. Graham and
Lois Browne and
Arcot Sowmya and
Erik Meijering},
title = {{GRAPHITE:} Graph-Based Interpretable Tissue Examination for Enhanced
Explainability in Breast Cancer Histopathology},
journal = {CoRR},
volume = {abs/2501.04206},
year = {2025},
url = {https://doi.org/10.48550/arXiv.2501.04206},
doi = {10.48550/ARXIV.2501.04206},
eprinttype = {arXiv},
eprint = {2501.04206},
timestamp = {Fri, 28 Feb 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2501-04206.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2503-10731,
author = {Md Mamunur Rahaman and
Ewan K. A. Millar and
Erik Meijering},
title = {Leveraging Vision-Language Embeddings for Zero-Shot Learning in Histopathology
Images},
journal = {CoRR},
volume = {abs/2503.10731},
year = {2025},
url = {https://doi.org/10.48550/arXiv.2503.10731},
doi = {10.48550/ARXIV.2503.10731},
eprinttype = {arXiv},
eprint = {2503.10731},
timestamp = {Sun, 13 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2503-10731.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2504-18799,
author = {Rashini Liyanarachchi and
Aditya Joshi and
Erik Meijering},
title = {A Survey on Multimodal Music Emotion Recognition},
journal = {CoRR},
volume = {abs/2504.18799},
year = {2025},
url = {https://doi.org/10.48550/arXiv.2504.18799},
doi = {10.48550/ARXIV.2504.18799},
eprinttype = {arXiv},
eprint = {2504.18799},
timestamp = {Fri, 04 Jul 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2504-18799.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/ZhuBCSM24,
author = {Jiayi Zhu and
Bart Bolsterlee and
Brian V. Y. Chow and
Yang Song and
Erik Meijering},
title = {Hybrid dual mean-teacher network with double-uncertainty guidance
for semi-supervised segmentation of magnetic resonance images},
journal = {Comput. Medical Imaging Graph.},
volume = {115},
pages = {102383},
year = {2024},
url = {https://doi.org/10.1016/j.compmedimag.2024.102383},
doi = {10.1016/J.COMPMEDIMAG.2024.102383},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmig/ZhuBCSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eaai/KhanNM24,
author = {Tariq Mahmood Khan and
Syed Saud Naqvi and
Erik Meijering},
title = {ESDMR-Net: {A} lightweight network with expand-squeeze and dual multiscale
residual connections for medical image segmentation},
journal = {Eng. Appl. Artif. Intell.},
volume = {133},
pages = {107995},
year = {2024},
url = {https://doi.org/10.1016/j.engappai.2024.107995},
doi = {10.1016/J.ENGAPPAI.2024.107995},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/eaai/KhanNM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/MondolMSM24,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Arcot Sowmya and
Erik Meijering},
title = {BioFusionNet: Deep Learning-Based Survival Risk Stratification in
{ER+} Breast Cancer Through Multifeature and Multimodal Data Fusion},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {28},
number = {9},
pages = {5290--5302},
year = {2024},
url = {https://doi.org/10.1109/JBHI.2024.3418341},
doi = {10.1109/JBHI.2024.3418341},
timestamp = {Fri, 20 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/MondolMSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/LiuHWWWM24,
author = {Min Liu and
Yubin Han and
Jiazheng Wang and
Can Wang and
Yaonan Wang and
Erik Meijering},
title = {LSKANet: Long Strip Kernel Attention Network for Robotic Surgical
Scene Segmentation},
journal = {{IEEE} Trans. Medical Imaging},
volume = {43},
number = {4},
pages = {1308--1322},
year = {2024},
url = {https://doi.org/10.1109/TMI.2023.3335406},
doi = {10.1109/TMI.2023.3335406},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/LiuHWWWM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/LiuWCLWM24,
author = {Min Liu and
Shuhan Wu and
Runze Chen and
Zhuangdian Lin and
Yaonan Wang and
Erik Meijering},
title = {Brain Image Segmentation for Ultrascale Neuron Reconstruction via
an Adaptive Dual-Task Learning Network},
journal = {{IEEE} Trans. Medical Imaging},
volume = {43},
number = {7},
pages = {2574--2586},
year = {2024},
url = {https://doi.org/10.1109/TMI.2024.3367384},
doi = {10.1109/TMI.2024.3367384},
timestamp = {Fri, 02 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/LiuWCLWM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tnn/DuWLWM24,
author = {Hao Du and
Jiazheng Wang and
Min Liu and
Yaonan Wang and
Erik Meijering},
title = {SwinPA-Net: Swin Transformer-Based Multiscale Feature Pyramid Aggregation
Network for Medical Image Segmentation},
journal = {{IEEE} Trans. Neural Networks Learn. Syst.},
volume = {35},
number = {4},
pages = {5355--5366},
year = {2024},
url = {https://doi.org/10.1109/TNNLS.2022.3204090},
doi = {10.1109/TNNLS.2022.3204090},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tnn/DuWLWM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/KhanINRM24,
author = {Tariq M. Khan and
Shahzaib Iqbal and
Syed Saud Naqvi and
Imran Razzak and
Erik Meijering},
title = {LMBF-Net: {A} Lightweight Multipath Bidirectional Focal Attention
Network For Multifeatures Segmentation},
booktitle = {{IEEE} International Conference on Image Processing, {ICIP} 2024,
Abu Dhabi, United Arab Emirates, october 27-30, 2024},
pages = {2807--2813},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ICIP51287.2024.10647542},
doi = {10.1109/ICIP51287.2024.10647542},
timestamp = {Sat, 31 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icip/KhanINRM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iros/HuM024,
author = {Yan Hu and
Erik Meijering and
Yang Song},
title = {Refining Airway Segmentation Through Breakage Filling and Leakage
Reduction Using Point Clouds},
booktitle = {{IEEE/RSJ} International Conference on Intelligent Robots and Systems,
{IROS} 2024, Abu Dhabi, United Arab Emirates, October 14-18, 2024},
pages = {11618--11623},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/IROS58592.2024.10802488},
doi = {10.1109/IROS58592.2024.10802488},
timestamp = {Fri, 03 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iros/HuM024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HengPMS24,
author = {Zhan Heng and
Maurice Pagnucco and
Erik Meijering and
Yang Song},
title = {Vascular Topology Rectification Network for Automated Retinal Artery/Vein
Segmentation},
booktitle = {{IEEE} International Symposium on Biomedical Imaging, {ISBI} 2024,
Athens, Greece, May 27-30, 2024},
pages = {1--4},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ISBI56570.2024.10635229},
doi = {10.1109/ISBI56570.2024.10635229},
timestamp = {Sun, 19 Jan 2025 13:09:49 +0100},
biburl = {https://dblp.org/rec/conf/isbi/HengPMS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MondolMSM24,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Arcot Sowmya and
Erik Meijering},
title = {MM-Survnet: Deep Learning-Based Survival Risk Stratification in Breast
Cancer Through Multimodal Data Fusion},
booktitle = {{IEEE} International Symposium on Biomedical Imaging, {ISBI} 2024,
Athens, Greece, May 27-30, 2024},
pages = {1--5},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ISBI56570.2024.10635810},
doi = {10.1109/ISBI56570.2024.10635810},
timestamp = {Fri, 06 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/MondolMSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RahamanMM24,
author = {Md Mamunur Rahaman and
Ewan K. A. Millar and
Erik Meijering},
title = {Histopathology Image Classification Using Supervised Contrastive Deep
Learning},
booktitle = {{IEEE} International Symposium on Biomedical Imaging, {ISBI} 2024,
Athens, Greece, May 27-30, 2024},
pages = {1--5},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ISBI56570.2024.10635260},
doi = {10.1109/ISBI56570.2024.10635260},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RahamanMM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SandarenuCSBGSMSM24,
author = {Piumi Sandarenu and
Julia Chen and
Iveta Slapetova and
Lois Browne and
Peter H. Graham and
Alexander Swarbrick and
Ewan K. A. Millar and
Yang Song and
Erik Meijering},
title = {Semi-Supervised Variational Autoencoder for Cell Feature Extraction
In Multiplexed Immunofluorescence Images},
booktitle = {{IEEE} International Symposium on Biomedical Imaging, {ISBI} 2024,
Athens, Greece, May 27-30, 2024},
pages = {1--5},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ISBI56570.2024.10635107},
doi = {10.1109/ISBI56570.2024.10635107},
timestamp = {Fri, 06 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SandarenuCSBGSMSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhuTYLSM24,
author = {Yanming Zhu and
Ari Tchetchenian and
Xuefei Yin and
Alan Wee{-}Chung Liew and
Yang Song and
Erik Meijering},
title = {AC-UNet: Adaptive Connection UNet for White Matter Tract Segmentation
Through Neural Architecture Search},
booktitle = {{IEEE} International Symposium on Biomedical Imaging, {ISBI} 2024,
Athens, Greece, May 27-30, 2024},
pages = {1--5},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/ISBI56570.2024.10635404},
doi = {10.1109/ISBI56570.2024.10635404},
timestamp = {Thu, 17 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ZhuTYLSM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-10717,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Arcot Sowmya and
Erik Meijering},
title = {BioFusionNet: Deep Learning-Based Survival Risk Stratification in
{ER+} Breast Cancer Through Multifeature and Multimodal Data Fusion},
journal = {CoRR},
volume = {abs/2402.10717},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.10717},
doi = {10.48550/ARXIV.2402.10717},
eprinttype = {arXiv},
eprint = {2402.10717},
timestamp = {Mon, 26 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-10717.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-11788,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Arcot Sowmya and
Erik Meijering},
title = {MM-SurvNet: Deep Learning-Based Survival Risk Stratification in Breast
Cancer Through Multimodal Data Fusion},
journal = {CoRR},
volume = {abs/2402.11788},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.11788},
doi = {10.48550/ARXIV.2402.11788},
eprinttype = {arXiv},
eprint = {2402.11788},
timestamp = {Mon, 26 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-11788.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-15727,
author = {Piumi Sandarenu and
Julia Chen and
Iveta Slapetova and
Lois Browne and
Peter H. Graham and
Alexander Swarbrick and
Ewan K. A. Millar and
Yang Song and
Erik Meijering},
title = {Semi-supervised variational autoencoder for cell feature extraction
in multiplexed immunofluorescence images},
journal = {CoRR},
volume = {abs/2406.15727},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.15727},
doi = {10.48550/ARXIV.2406.15727},
eprinttype = {arXiv},
eprint = {2406.15727},
timestamp = {Mon, 05 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-15727.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-02871,
author = {Tariq Mahmood Khan and
Shahzaib Iqbal and
Syed Saud Naqvi and
Imran Razzak and
Erik Meijering},
title = {LMBF-Net: {A} Lightweight Multipath Bidirectional Focal Attention
Network for Multifeatures Segmentation},
journal = {CoRR},
volume = {abs/2407.02871},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.02871},
doi = {10.48550/ARXIV.2407.02871},
eprinttype = {arXiv},
eprint = {2407.02871},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-02871.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-15132,
author = {Ari Tchetchenian and
Leo R. Zekelman and
Yuqian Chen and
Jarrett Rushmore and
Fan Zhang and
Edward H. Yeterian and
Nikos Makris and
Yogesh Rathi and
Erik Meijering and
Yang Song and
Lauren J. O'Donnell},
title = {Deep multimodal saliency parcellation of cerebellar pathways: linking
microstructure and individual function through explainable multitask
learning},
journal = {CoRR},
volume = {abs/2407.15132},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.15132},
doi = {10.48550/ARXIV.2407.15132},
eprinttype = {arXiv},
eprint = {2407.15132},
timestamp = {Sat, 24 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-15132.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2408-07903,
author = {Yao Yao and
Ihor Smal and
Ilya Grigoriev and
Anna Akhmanova and
Erik Meijering},
title = {Deep Joint Denoising and Detection for Enhanced Intracellular Particle
Analysis},
journal = {CoRR},
volume = {abs/2408.07903},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2408.07903},
doi = {10.48550/ARXIV.2408.07903},
eprinttype = {arXiv},
eprint = {2408.07903},
timestamp = {Sat, 28 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2408-07903.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2409-03367,
author = {Shahzaib Iqbal and
Tariq Mahmood Khan and
Syed Saud Naqvi and
Asim Naveed and
Erik Meijering},
title = {TBConvL-Net: {A} Hybrid Deep Learning Architecture for Robust Medical
Image Segmentation},
journal = {CoRR},
volume = {abs/2409.03367},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2409.03367},
doi = {10.48550/ARXIV.2409.03367},
eprinttype = {arXiv},
eprint = {2409.03367},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2409-03367.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2411-17556,
author = {Tariq Mahmood Khan and
Dawn Lin and
Shahzaib Iqbal and
Erik Meijering},
title = {TAFM-Net: {A} Novel Approach to Skin Lesion Segmentation Using Transformer
Attention and Focal Modulation},
journal = {CoRR},
volume = {abs/2411.17556},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2411.17556},
doi = {10.48550/ARXIV.2411.17556},
eprinttype = {arXiv},
eprint = {2411.17556},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2411-17556.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2412-06227,
author = {Marsha Mariya Kappan and
Eduardo Ben{\'{\i}}tez Sandoval and
Erik Meijering and
Francisco Cruz},
title = {Attention-Enhanced Lightweight Hourglass Network for Human Pose Estimation},
journal = {CoRR},
volume = {abs/2412.06227},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2412.06227},
doi = {10.48550/ARXIV.2412.06227},
eprinttype = {arXiv},
eprint = {2412.06227},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2412-06227.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RanaSMS23,
author = {Priyanka Rana and
Arcot Sowmya and
Erik Meijering and
Yang Song},
title = {Imbalanced classification for protein subcellular localization with
multilabel oversampling},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac841},
doi = {10.1093/BIOINFORMATICS/BTAC841},
timestamp = {Tue, 28 Oct 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RanaSMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/ChenLCWM23,
author = {Runze Chen and
Min Liu and
Weixun Chen and
Yaonan Wang and
Erik Meijering},
title = {Deep learning in mesoscale brain image analysis: {A} review},
journal = {Comput. Biol. Medicine},
volume = {167},
pages = {107617},
year = {2023},
url = {https://doi.org/10.1016/j.compbiomed.2023.107617},
doi = {10.1016/J.COMPBIOMED.2023.107617},
timestamp = {Wed, 24 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/ChenLCWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eaai/KhanARM23,
author = {Tariq Mahmood Khan and
Muhammad Arsalan and
Imran Razzak and
Erik Meijering},
title = {Simple and robust depth-wise cascaded network for polyp segmentation},
journal = {Eng. Appl. Artif. Intell.},
volume = {121},
pages = {106023},
year = {2023},
url = {https://doi.org/10.1016/j.engappai.2023.106023},
doi = {10.1016/J.ENGAPPAI.2023.106023},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/eaai/KhanARM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/ZhuWYZMH23,
author = {Yanming Zhu and
Min Wang and
Xuefei Yin and
Jue Zhang and
Erik Meijering and
Jiankun Hu},
title = {Deep Learning in Diverse Intelligent Sensor Based Systems},
journal = {Sensors},
volume = {23},
number = {1},
pages = {62},
year = {2023},
url = {https://doi.org/10.3390/s23010062},
doi = {10.3390/S23010062},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sensors/ZhuWYZMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/AviyenteFMMLVOKU23,
author = {Selin Aviyente and
Alejandro F. Frangi and
Erik Meijering and
Arrate Mu{\~{n}}oz{-}Barrutia and
Michael Liebling and
Dimitri Van De Ville and
Jean{-}Christophe Olivo{-}Marin and
Jelena Kovacevic and
Michael Unser},
title = {From Nano to Macro: An overview of the {IEEE} Bio Image and Signal
Processing Technical Committee},
journal = {{IEEE} Signal Process. Mag.},
volume = {40},
number = {4},
pages = {61--71},
year = {2023},
url = {https://doi.org/10.1109/MSP.2023.3242833},
doi = {10.1109/MSP.2023.3242833},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/AviyenteFMMLVOKU23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/WeiLLWM23,
author = {Xiaodan Wei and
Qinghao Liu and
Min Liu and
Yaonan Wang and
Erik Meijering},
title = {3D Soma Detection in Large-Scale Whole Brain Images via a Two-Stage
Neural Network},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {1},
pages = {148--157},
year = {2023},
url = {https://doi.org/10.1109/TMI.2022.3206605},
doi = {10.1109/TMI.2022.3206605},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/WeiLLWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ZhuYM23,
author = {Yanming Zhu and
Xuefei Yin and
Erik Meijering},
title = {A Compound Loss Function With Shape Aware Weight Map for Microscopy
Cell Segmentation},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {5},
pages = {1278--1288},
year = {2023},
url = {https://doi.org/10.1109/TMI.2022.3226226},
doi = {10.1109/TMI.2022.3226226},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/ZhuYM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/FanSMS23,
author = {Lei Fan and
Arcot Sowmya and
Erik Meijering and
Yang Song},
title = {Cancer Survival Prediction From Whole Slide Images With Self-Supervised
Learning and Slide Consistency},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {5},
pages = {1401--1412},
year = {2023},
url = {https://doi.org/10.1109/TMI.2022.3228275},
doi = {10.1109/TMI.2022.3228275},
timestamp = {Thu, 15 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/FanSMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ShenWLWDZM23,
author = {Wenting Shen and
Yaonan Wang and
Min Liu and
Jiazheng Wang and
Renjie Ding and
Zhe Zhang and
Erik Meijering},
title = {Branch Aggregation Attention Network for Robotic Surgical Instrument
Segmentation},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {11},
pages = {3408--3419},
year = {2023},
url = {https://doi.org/10.1109/TMI.2023.3288127},
doi = {10.1109/TMI.2023.3288127},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/ShenWLWDZM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ausai/HuMS23,
author = {Yan Hu and
Erik Meijering and
Yang Song},
editor = {Tongliang Liu and
Geoffrey I. Webb and
Lin Yue and
Dadong Wang},
title = {Large-Kernel Attention Network with Distance Regression and Topological
Self-correction for Airway Segmentation},
booktitle = {{AI} 2023: Advances in Artificial Intelligence - 36th Australasian
Joint Conference on Artificial Intelligence, {AI} 2023, Brisbane,
QLD, Australia, November 28 - December 1, 2023, Proceedings, Part
{I}},
series = {Lecture Notes in Computer Science},
volume = {14471},
pages = {115--126},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-99-8388-9\_10},
doi = {10.1007/978-981-99-8388-9\_10},
timestamp = {Sat, 09 Dec 2023 19:23:42 +0100},
biburl = {https://dblp.org/rec/conf/ausai/HuMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dicta/KhanAIRM23,
author = {Tariq Mahmood Khan and
Muhammad Arsalan and
Shahzaib Iqbal and
Imran Razzak and
Erik Meijering},
title = {Feature Enhancer Segmentation Network (FES-Net)for Vessel Segmentation},
booktitle = {International Conference on Digital Image Computing: Techniques and
Applications, {DICTA} 2023, Port Macquarie, Australia, November 28
- Dec. 1, 2023},
pages = {160--167},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/DICTA60407.2023.00030},
doi = {10.1109/DICTA60407.2023.00030},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dicta/KhanAIRM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/BrahmavarRDVVHKMS23,
author = {Shreyas Bhat Brahmavar and
Rohit Rajesh and
Tirtharaj Dash and
Lovekesh Vig and
Tanmay Tulsidas Verlekar and
Md Mahmudul Hasan and
Tariq Mahmood Khan and
Erik Meijering and
Ashwin Srinivasan},
title = {{IKD+:} Reliable Low Complexity Deep Models for Retinopathy Classification},
booktitle = {{IEEE} International Conference on Image Processing, {ICIP} 2023,
Kuala Lumpur, Malaysia, October 8-11, 2023},
pages = {2400--2404},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICIP49359.2023.10221899},
doi = {10.1109/ICIP49359.2023.10221899},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icip/BrahmavarRDVVHKMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ShanmugalingamMSM23,
author = {Kuruparan Shanmugalingam and
Daniel Aaron Moses and
Arcot Sowmya and
Erik Meijering},
title = {Membranous Urethral Reconstruction and Segmentation in Multiplanar
{T2W} {MRI} Images},
booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2023, Cartagena, Colombia, April 18-21, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ISBI53787.2023.10230618},
doi = {10.1109/ISBI53787.2023.10230618},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ShanmugalingamMSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhuBCSM23,
author = {Jiayi Zhu and
Bart Bolsterlee and
Brian V. Y. Chow and
Yang Song and
Erik Meijering},
editor = {Hayit Greenspan and
Anant Madabhushi and
Parvin Mousavi and
Septimiu E. Salcudean and
James Duncan and
Tanveer F. Syeda{-}Mahmood and
Russell H. Taylor},
title = {Uncertainty and Shape-Aware Continual Test-Time Adaptation for Cross-Domain
Segmentation of Medical Images},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 - 26th International Conference, Vancouver, BC, Canada, October
8-12, 2023, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {14222},
pages = {659--669},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43898-1\_63},
doi = {10.1007/978-3-031-43898-1\_63},
timestamp = {Tue, 13 Aug 2024 14:18:07 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ZhuBCSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlmi-ws/ShanmugalingamSMM23,
author = {Kuruparan Shanmugalingam and
Arcot Sowmya and
Daniel Aaron Moses and
Erik Meijering},
editor = {Xiaohuan Cao and
Xuanang Xu and
Islem Rekik and
Zhiming Cui and
Xi Ouyang},
title = {Prostate Segmentation Using Multiparametric and Multiplanar Magnetic
Resonance Images},
booktitle = {Machine Learning in Medical Imaging - 14th International Workshop,
{MLMI} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC,
Canada, October 8, 2023, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {14348},
pages = {217--226},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-45673-2\_22},
doi = {10.1007/978-3-031-45673-2\_22},
timestamp = {Wed, 18 Oct 2023 20:03:53 +0200},
biburl = {https://dblp.org/rec/conf/mlmi-ws/ShanmugalingamSMM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-07710,
author = {Masoud Fetanat and
Michael C. Stevens and
Pankaj Jain and
Christopher Hayward and
Erik Meijering and
Nigel H. Lovell},
title = {Fully Elman Neural Network: {A} Novel Deep Recurrent Neural Network
Optimized by an Improved Harris Hawks Algorithm for Classification
of Pulmonary Arterial Wedge Pressure},
journal = {CoRR},
volume = {abs/2301.07710},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.07710},
doi = {10.48550/ARXIV.2301.07710},
eprinttype = {arXiv},
eprint = {2301.07710},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-07710.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-01790,
author = {Annika Reinke and
Minu Tizabi and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Carole H. Sudre and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Arriel Benis and
Matthew B. Blaschko and
Florian B{\"{u}}ttner and
M. Jorge Cardoso and
Veronika Cheplygina and
Jianxu Chen and
Evangelia Christodoulou and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Luciana Ferrer and
Adrian Galdran and
Bram van Ginneken and
Ben Glocker and
Patrick Godau and
Robert Haase and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Fabian Isensee and
Pierre Jannin and
Charles E. Kahn and
Dagmar Kainmueller and
Bernhard Kainz and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Jens Kleesiek and
Florian Kofler and
Thijs Kooi and
Annette Kopp{-}Schneider and
Michal Kozubek and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Brennan Nichyporuk and
Felix Nickel and
Jens Petersen and
Susanne M. Rafelski and
Nasir M. Rajpoot and
Mauricio Reyes and
Michael A. Riegler and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clara I. S{\'{a}}nchez and
Shravya Shetty and
Maarten van Smeden and
Ronald M. Summers and
Abdel A. Taha and
Aleksei Tiulpin and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Manuel Wiesenfarth and
Ziv R. Yaniv and
Paul F. J{\"{a}}ger and
Lena Maier{-}Hein},
title = {Understanding metric-related pitfalls in image analysis validation},
journal = {CoRR},
volume = {abs/2302.01790},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.01790},
doi = {10.48550/ARXIV.2302.01790},
eprinttype = {arXiv},
eprint = {2302.01790},
timestamp = {Sat, 15 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-01790.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-02310,
author = {Shreyas Bhat Brahmavar and
Rohit Rajesh and
Tirtharaj Dash and
Lovekesh Vig and
Tanmay Tulsidas Verlekar and
Md Mahmudul Hasan and
Tariq Mahmood Khan and
Erik Meijering and
Ashwin Srinivasan},
title = {{IKD+:} Reliable Low Complexity Deep Models For Retinopathy Classification},
journal = {CoRR},
volume = {abs/2303.02310},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.02310},
doi = {10.48550/ARXIV.2303.02310},
eprinttype = {arXiv},
eprint = {2303.02310},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-02310.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-05126,
author = {Jiayi Zhu and
Bart Bolsterlee and
Brian V. Y. Chow and
Yang Song and
Erik Meijering},
title = {Hybrid Dual Mean-Teacher Network With Double-Uncertainty Guidance
for Semi-Supervised Segmentation of {MRI} Scans},
journal = {CoRR},
volume = {abs/2303.05126},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.05126},
doi = {10.48550/ARXIV.2303.05126},
eprinttype = {arXiv},
eprint = {2303.05126},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-05126.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-09987,
author = {Md Mamunur Rahaman and
Ewan K. A. Millar and
Erik Meijering},
title = {Breast Cancer Histopathology Image based Gene Expression Prediction
using Spatial Transcriptomics data and Deep Learning},
journal = {CoRR},
volume = {abs/2303.09987},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.09987},
doi = {10.48550/ARXIV.2303.09987},
eprinttype = {arXiv},
eprint = {2303.09987},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-09987.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-04507,
author = {Raktim Kumar Mondol and
Ewan K. A. Millar and
Peter H. Graham and
Lois Browne and
Arcot Sowmya and
Erik Meijering},
title = {hist2RNA: An efficient deep learning architecture to predict gene
expression from breast cancer histopathology images},
journal = {CoRR},
volume = {abs/2304.04507},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.04507},
doi = {10.48550/ARXIV.2304.04507},
eprinttype = {arXiv},
eprint = {2304.04507},
timestamp = {Tue, 18 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-04507.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-03535,
author = {Tariq Mahmood Khan and
Muhammad Arsalan and
Shahzaib Iqbal and
Imran Razzak and
Erik Meijering},
title = {Feature Enhancer Segmentation Network (FES-Net) for Vessel Segmentation},
journal = {CoRR},
volume = {abs/2309.03535},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.03535},
doi = {10.48550/ARXIV.2309.03535},
eprinttype = {arXiv},
eprint = {2309.03535},
timestamp = {Tue, 01 Apr 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-03535.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-12325,
author = {Karim Lekadir and
Aasa Feragen and
Abdul Joseph Fofanah and
Alejandro F. Frangi and
Alena Buyx and
Anais Emelie and
Andrea Lara and
Antonio R. Porras and
An{-}Wen Chan and
Arcadi Navarro and
Ben Glocker and
Benard Ohene Botwe and
Bishesh Khanal and
Brigit Beger and
Carol C. Wu and
Celia Cintas and
Curtis P. Langlotz and
Daniel Rueckert and
Deogratias Mzurikwao and
Dimitrios I. Fotiadis and
Doszhan Zhussupov and
Enzo Ferrante and
Erik Meijering and
Eva Weicken and
Fabio A. Gonz{\'{a}}lez and
Folkert W. Asselbergs and
Fred W. Prior and
Gabriel P. Krestin and
Gary S. Collins and
Geletaw Sahle Tegenaw and
Georgios Kaissis and
Gianluca Misuraca and
Gianna Tsakou and
Girish Dwivedi and
Haridimos Kondylakis and
Harsha Jayakody and
Henry C. Woodruff and
Hugo J. W. L. Aerts and
Ian Walsh and
Ioanna Chouvarda and
Ir{\`{e}}ne Buvat and
Islem Rekik and
James S. Duncan and
Jayashree Kalpathy{-}Cramer and
Jihad Zahir and
Jinah Park and
John Mongan and
Judy W. Gichoya and
Julia A. Schnabel and
et al.},
title = {{FUTURE-AI:} International consensus guideline for trustworthy and
deployable artificial intelligence in healthcare},
journal = {CoRR},
volume = {abs/2309.12325},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.12325},
doi = {10.48550/ARXIV.2309.12325},
eprinttype = {arXiv},
eprint = {2309.12325},
timestamp = {Tue, 14 Oct 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-12325.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-10585,
author = {Tariq Mahmood Khan and
Syed Saud Naqvi and
Erik Meijering},
title = {ESDMR-Net: {A} Lightweight Network With Expand-Squeeze and Dual Multiscale
Residual Connections for Medical Image Segmentation},
journal = {CoRR},
volume = {abs/2312.10585},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.10585},
doi = {10.48550/ARXIV.2312.10585},
eprinttype = {arXiv},
eprint = {2312.10585},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-10585.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/MeijeringCMMY22,
author = {Erik Meijering and
Vince D. Calhoun and
Gloria Menegaz and
David J. Miller and
Jong Chul Ye},
title = {Deep Learning in Biological Image and Signal Processing [From the
Guest Editors]},
journal = {{IEEE} Signal Process. Mag.},
volume = {39},
number = {2},
pages = {24--26},
year = {2022},
url = {https://doi.org/10.1109/MSP.2021.3134525},
doi = {10.1109/MSP.2021.3134525},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/MeijeringCMMY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/FetanatSJHML22,
author = {Masoud Fetanat and
Michael C. Stevens and
Pankaj Jain and
Christopher Hayward and
Erik Meijering and
Nigel H. Lovell},
title = {Fully Elman Neural Network: {A} Novel Deep Recurrent Neural Network
Optimized by an Improved Harris Hawks Algorithm for Classification
of Pulmonary Arterial Wedge Pressure},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {69},
number = {5},
pages = {1733--1744},
year = {2022},
url = {https://doi.org/10.1109/TBME.2021.3129459},
doi = {10.1109/TBME.2021.3129459},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbe/FetanatSJHML22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/JiangCLWM22,
author = {Yi Jiang and
Weixun Chen and
Min Liu and
Yaonan Wang and
Erik Meijering},
title = {DeepRayburst for Automatic Shape Analysis of Tree-Like Structures
in Biomedical Images},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {5},
pages = {2204--2215},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2021.3124514},
doi = {10.1109/JBHI.2021.3124514},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/JiangCLWM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/YangLWZM22,
author = {Bo Yang and
Min Liu and
Yaonan Wang and
Kang Zhang and
Erik Meijering},
title = {Structure-Guided Segmentation for 3D Neuron Reconstruction},
journal = {{IEEE} Trans. Medical Imaging},
volume = {41},
number = {4},
pages = {903--914},
year = {2022},
url = {https://doi.org/10.1109/TMI.2021.3125777},
doi = {10.1109/TMI.2021.3125777},
timestamp = {Wed, 17 Sep 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/YangLWZM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ChenLDRWM22,
author = {Weixun Chen and
Min Liu and
Hao Du and
Miroslav Radojevic and
Yaonan Wang and
Erik Meijering},
title = {Deep-Learning-Based Automated Neuron Reconstruction From 3D Microscopy
Images Using Synthetic Training Images},
journal = {{IEEE} Trans. Medical Imaging},
volume = {41},
number = {5},
pages = {1031--1042},
year = {2022},
url = {https://doi.org/10.1109/TMI.2021.3130934},
doi = {10.1109/TMI.2021.3130934},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/ChenLDRWM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/WangLWFM22,
author = {Xuan Wang and
Min Liu and
Yaonan Wang and
Jiawang Fan and
Erik Meijering},
title = {A 3D Tubular Flux Model for Centerline Extraction in Neuron Volumetric
Images},
journal = {{IEEE} Trans. Medical Imaging},
volume = {41},
number = {5},
pages = {1069--1079},
year = {2022},
url = {https://doi.org/10.1109/TMI.2021.3130987},
doi = {10.1109/TMI.2021.3130987},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/WangLWFM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iconip/KhanNRM22,
author = {Tariq Mahmood Khan and
Syed Saud Naqvi and
Antonio Robles{-}Kelly and
Erik Meijering},
editor = {Mohammad Tanveer and
Sonali Agarwal and
Seiichi Ozawa and
Asif Ekbal and
Adam Jatowt},
title = {Neural Network Compression by Joint Sparsity Promotion and Redundancy
Reduction},
booktitle = {Neural Information Processing - 29th International Conference, {ICONIP}
2022, Virtual Event, November 22-26, 2022, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13623},
pages = {612--623},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-30105-6\_51},
doi = {10.1007/978-3-031-30105-6\_51},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iconip/KhanNRM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HuPSMCZDZS22,
author = {Yan Hu and
Yongsheng Pan and
Yang Song and
Erik Meijering and
Zhiming Cui and
Yue Zhao and
Zhongxiang Ding and
Min Zhu and
Dinggang Shen},
title = {Parallel Sinogram and Image Framework With Co-Training Strategy for
Metal Artifact Reduction in Tooth Ct Images},
booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2022, Kolkata, India, March 28-31, 2022},
pages = {1--4},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ISBI52829.2022.9761653},
doi = {10.1109/ISBI52829.2022.9761653},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/HuPSMCZDZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RanaSMS22,
author = {Priyanka Rana and
Arcot Sowmya and
Erik Meijering and
Yang Song},
title = {Imbalanced Cell-Cycle Classification Using Wgan-Div and Mixup},
booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2022, Kolkata, India, March 28-31, 2022},
pages = {1--4},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ISBI52829.2022.9761488},
doi = {10.1109/ISBI52829.2022.9761488},
timestamp = {Wed, 10 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RanaSMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhuBCSM22,
author = {Jiayi Zhu and
Bart Bolsterlee and
Brian V. Y. Chow and
Yang Song and
Erik Meijering},
title = {Hybrid Attentive Unet for Segmentation of Lower Leg Muscles and Bones
From {MRI} Scans For Musculoskeletal Research},
booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2022, Kolkata, India, March 28-31, 2022},
pages = {1--5},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ISBI52829.2022.9761501},
doi = {10.1109/ISBI52829.2022.9761501},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/ZhuBCSM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/FanSMS22,
author = {Lei Fan and
Arcot Sowmya and
Erik Meijering and
Yang Song},
editor = {Linwei Wang and
Qi Dou and
P. Thomas Fletcher and
Stefanie Speidel and
Shuo Li},
title = {Fast FF-to-FFPE Whole Slide Image Translation via Laplacian Pyramid
and Contrastive Learning},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2022 - 25th International Conference, Singapore, September 18-22,
2022, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {13432},
pages = {409--419},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-16434-7\_40},
doi = {10.1007/978-3-031-16434-7\_40},
timestamp = {Thu, 15 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/FanSMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/ShanmugalingamS22,
author = {Kuruparan Shanmugalingam and
Arcot Sowmya and
Daniel Aaron Moses and
Erik Meijering},
editor = {Ender Konukoglu and
Bjoern H. Menze and
Archana Venkataraman and
Christian F. Baumgartner and
Qi Dou and
Shadi Albarqouni},
title = {Attention Guided Deep Supervision Model for Prostate Segmentation
in Multisite Heterogeneous {MRI} Data},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2022, 6-8 July 2022, Zurich, Switzerland},
series = {Proceedings of Machine Learning Research},
volume = {172},
pages = {1085--1095},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v172/shanmugalingam22a.html},
timestamp = {Fri, 17 Feb 2023 16:29:10 +0100},
biburl = {https://dblp.org/rec/conf/midl/ShanmugalingamS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/CastillaMSMO22,
author = {Carlos Castilla and
Martin Maska and
Dmitry V. Sorokin and
Erik Meijering and
Carlos Ortiz{-}de{-}Solorzano},
title = {Datasets used in "3-D quantification of filopodia in motile cancer
cells" {IEEE} Transactions on Medical Imaging 38(3), 862-872
{(2019)}},
publisher = {{IEEE} DataPort},
year = {2022},
month = may,
howpublished = {\url{https://doi.org/10.21227/H26W9K}},
note = {Accessed on YYYY-MM-DD.},
url = {https://doi.org/10.21227/H26W9K},
doi = {10.21227/H26W9K},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/data/10/CastillaMSMO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-01653,
author = {Lena Maier{-}Hein and
Annika Reinke and
Evangelia Christodoulou and
Ben Glocker and
Patrick Godau and
Fabian Isensee and
Jens Kleesiek and
Michal Kozubek and
Mauricio Reyes and
Michael A. Riegler and
Manuel Wiesenfarth and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Minu Dietlinde Tizabi and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Peter Bankhead and
Arriel Benis and
M. Jorge Cardoso and
Veronika Cheplygina and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Bram van Ginneken and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Pierre Jannin and
Charles E. Kahn and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Annette Kopp{-}Schneider and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
David Moher and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Felix Nickel and
Brennan Nichyporuk and
Jens Petersen and
Nasir M. Rajpoot and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clarisa S{\'{a}}nchez Guti{\'{e}}rrez and
Shravya Shetty and
Maarten van Smeden and
Carole H. Sudre and
Ronald M. Summers and
Abdel A. Taha and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Paul F. J{\"{a}}ger},
title = {Metrics reloaded: Pitfalls and recommendations for image analysis
validation},
journal = {CoRR},
volume = {abs/2206.01653},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.01653},
doi = {10.48550/ARXIV.2206.01653},
eprinttype = {arXiv},
eprint = {2206.01653},
timestamp = {Sat, 15 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-01653.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07451,
author = {Tariq Mahmood Khan and
Syed Saud Naqvi and
Antonio Robles{-}Kelly and
Erik Meijering},
title = {Neural Network Compression by Joint Sparsity Promotion and Redundancy
Reduction},
journal = {CoRR},
volume = {abs/2210.07451},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.07451},
doi = {10.48550/ARXIV.2210.07451},
eprinttype = {arXiv},
eprint = {2210.07451},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-07451.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-08168,
author = {Tariq Mahmood Khan and
Muhammad Arsalan and
Antonio Robles{-}Kelly and
Erik Meijering},
title = {MKIS-Net: {A} Light-Weight Multi-Kernel Network for Medical Image
Segmentation},
journal = {CoRR},
volume = {abs/2210.08168},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.08168},
doi = {10.48550/ARXIV.2210.08168},
eprinttype = {arXiv},
eprint = {2210.08168},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-08168.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuM21,
author = {Yanming Zhu and
Erik Meijering},
title = {Automatic improvement of deep learning-based cell segmentation in
time-lapse microscopy by neural architecture search},
journal = {Bioinform.},
volume = {37},
number = {24},
pages = {4844--4850},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab556},
doi = {10.1093/BIOINFORMATICS/BTAB556},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/ShenLWGMW21,
author = {Lan Shen and
Min Liu and
Chao Wang and
Changhao Guo and
Erik Meijering and
Yaonan Wang},
title = {Efficient 3D Junction Detection in Biomedical Images Based on a Circular
Sampling Model and Reverse Mapping},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {25},
number = {5},
pages = {1612--1623},
year = {2021},
url = {https://doi.org/10.1109/JBHI.2020.3036743},
doi = {10.1109/JBHI.2020.3036743},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/ShenLWGMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/JiangCLWM21,
author = {Yi Jiang and
Weixun Chen and
Min Liu and
Yaonan Wang and
Erik Meijering},
title = {3D Neuron Microscopy Image Segmentation via the Ray-Shooting Model
and a {DC-BLSTM} Network},
journal = {{IEEE} Trans. Medical Imaging},
volume = {40},
number = {1},
pages = {26--37},
year = {2021},
url = {https://doi.org/10.1109/TMI.2020.3021493},
doi = {10.1109/TMI.2020.3021493},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/JiangCLWM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/ChenLZTMRW21,
author = {Weixun Chen and
Min Liu and
Qi Zhan and
Yinghui Tan and
Erik Meijering and
Miroslav Radojevic and
Yaonan Wang},
title = {Spherical-Patches Extraction for Deep-Learning-Based Critical Points
Detection in 3D Neuron Microscopy Images},
journal = {{IEEE} Trans. Medical Imaging},
volume = {40},
number = {2},
pages = {527--538},
year = {2021},
url = {https://doi.org/10.1109/TMI.2020.3031289},
doi = {10.1109/TMI.2020.3031289},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/ChenLZTMRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iconip/HuM0S21,
author = {Yan Hu and
Erik Meijering and
Yong Xia and
Yang Song},
editor = {Teddy Mantoro and
Minho Lee and
Media Anugerah Ayu and
Kok Wai Wong and
Achmad Nizar Hidayanto},
title = {Deformable Convolution and Semi-supervised Learning in Point Clouds
for Aneurysm Classification and Segmentation},
booktitle = {Neural Information Processing - 28th International Conference, {ICONIP}
2021, Sanur, Bali, Indonesia, December 8-12, 2021, Proceedings, Part
{VI}},
series = {Communications in Computer and Information Science},
volume = {1517},
pages = {283--290},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-92310-5\_33},
doi = {10.1007/978-3-030-92310-5\_33},
timestamp = {Fri, 24 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iconip/HuM0S21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RanaMSS21,
author = {Priyanka Rana and
Erik Meijering and
Arcot Sowmya and
Yang Song},
title = {Multi-Label Classification Based On Subcellular Region-Guided Feature
Description For Protein Localisation},
booktitle = {18th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2021, Nice, France, April 13-16, 2021},
pages = {1929--1933},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/ISBI48211.2021.9434145},
doi = {10.1109/ISBI48211.2021.9434145},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RanaMSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WeiHLM21,
author = {Wenzhao Wei and
Sacha Haidinger and
John G. Lock and
Erik Meijering},
editor = {Chunfeng Lian and
Xiaohuan Cao and
Islem Rekik and
Xuanang Xu and
Pingkun Yan},
title = {Deep Representation Learning for Image-Based Cell Profiling},
booktitle = {Machine Learning in Medical Imaging - 12th International Workshop,
{MLMI} 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
September 27, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12966},
pages = {487--497},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87589-3\_50},
doi = {10.1007/978-3-030-87589-3\_50},
timestamp = {Mon, 07 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/WeiHLM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/FanSMS21,
author = {Lei Fan and
Arcot Sowmya and
Erik Meijering and
Yang Song},
editor = {Marleen de Bruijne and
Philippe C. Cattin and
St{\'{e}}phane Cotin and
Nicolas Padoy and
Stefanie Speidel and
Yefeng Zheng and
Caroline Essert},
title = {Learning Visual Features by Colorization for Slide-Consistent Survival
Prediction from Whole Slide Images},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2021 - 24th International Conference, Strasbourg, France, September
27 - October 1, 2021, Proceedings, Part {VIII}},
series = {Lecture Notes in Computer Science},
volume = {12908},
pages = {592--601},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87237-3\_57},
doi = {10.1007/978-3-030-87237-3\_57},
timestamp = {Thu, 15 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/FanSMS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-11065,
author = {Tariq Mahmood Khan and
Syed Saud Naqvi and
Erik Meijering},
title = {Leveraging Image Complexity in Macro-Level Neural Network Design for
Medical Image Segmentation},
journal = {CoRR},
volume = {abs/2112.11065},
year = {2021},
url = {https://arxiv.org/abs/2112.11065},
eprinttype = {arXiv},
eprint = {2112.11065},
timestamp = {Wed, 05 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-11065.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaoSGAM20,
author = {Yao Yao and
Ihor Smal and
Ilya Grigoriev and
Anna Akhmanova and
Erik Meijering},
title = {Deep-learning method for data association in particle tracking},
journal = {Bioinform.},
volume = {36},
number = {19},
pages = {4935--4941},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa597},
doi = {10.1093/BIOINFORMATICS/BTAA597},
timestamp = {Thu, 31 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaoSGAM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/GeurtsOKLHM20,
author = {Samu{\"{e}}l N. Geurts and
Nynke Oosterhof and
Laura E. Kuil and
Herma C. van der Linde and
Tjakko J. van Ham and
Erik Meijering},
title = {Automated Quantitative Analysis of Microglia in Bright-Field Images
of Zebrafish},
booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2020, Iowa City, IA, USA, April 3-7, 2020},
pages = {522--525},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ISBI45749.2020.9098339},
doi = {10.1109/ISBI45749.2020.9098339},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/GeurtsOKLHM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhuM20,
author = {Yanming Zhu and
Erik Meijering},
editor = {Mingxia Liu and
Pingkun Yan and
Chunfeng Lian and
Xiaohuan Cao},
title = {Neural Architecture Search for Microscopy Cell Segmentation},
booktitle = {Machine Learning in Medical Imaging - 11th International Workshop,
{MLMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October
4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12436},
pages = {542--551},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59861-7\_55},
doi = {10.1007/978-3-030-59861-7\_55},
timestamp = {Tue, 18 Jan 2022 13:58:27 +0100},
biburl = {https://dblp.org/rec/conf/miccai/ZhuM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/MataRFSWMMR19,
author = {Gadea Mata and
Miroslav Radojevic and
Carlos Fernandez{-}Lozano and
Ihor Smal and
Niels Werij and
Miguel Morales and
Erik Meijering and
Julio Rubio},
title = {Automated Neuron Detection in High-Content Fluorescence Microscopy
Images Using Machine Learning},
journal = {Neuroinformatics},
volume = {17},
number = {2},
pages = {253--269},
year = {2019},
url = {https://doi.org/10.1007/s12021-018-9399-4},
doi = {10.1007/S12021-018-9399-4},
timestamp = {Tue, 17 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ni/MataRFSWMMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/RadojevicM19,
author = {Miroslav Radojevic and
Erik Meijering},
title = {Automated Neuron Reconstruction from 3D Fluorescence Microscopy Images
Using Sequential Monte Carlo Estimation},
journal = {Neuroinformatics},
volume = {17},
number = {3},
pages = {423--442},
year = {2019},
url = {https://doi.org/10.1007/s12021-018-9407-8},
doi = {10.1007/S12021-018-9407-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/RadojevicM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/FehriGLMJF19,
author = {Hamid Fehri and
Ali Gooya and
Yuanjun Lu and
Erik Meijering and
Simon A. Johnston and
Alejandro F. Frangi},
title = {Bayesian Polytrees With Learned Deep Features for Multi-Class Cell
Segmentation},
journal = {{IEEE} Trans. Image Process.},
volume = {28},
number = {7},
pages = {3246--3260},
year = {2019},
url = {https://doi.org/10.1109/TIP.2019.2895455},
doi = {10.1109/TIP.2019.2895455},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/FehriGLMJF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CastillaMSMO19,
author = {Carlos Castilla and
Martin Maska and
Dmitry V. Sorokin and
Erik Meijering and
Carlos Ortiz{-}de{-}Solorzano},
title = {3-D Quantification of Filopodia in Motile Cancer Cells},
journal = {{IEEE} Trans. Medical Imaging},
volume = {38},
number = {3},
pages = {862--872},
year = {2019},
url = {https://doi.org/10.1109/TMI.2018.2873842},
doi = {10.1109/TMI.2018.2873842},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/CastillaMSMO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/BergwerfBSJM19,
author = {Herman Bergwerf and
Malik Bechakra and
Ihor Smal and
Joost L. M. Jongen and
Erik Meijering},
title = {Nerve Fiber Segmentation in Bright-Field Microscopy Images of Skin
Biopsies Using Deep Learning},
booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2019, Venice, Italy, April 8-11, 2019},
pages = {232--235},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ISBI.2019.8759504},
doi = {10.1109/ISBI.2019.8759504},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/BergwerfBSJM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalYGM19,
author = {Ihor Smal and
Yao Yao and
Niels Galjart and
Erik Meijering},
title = {Facilitating Data Association In Particle Tracking Using Autoencoding
And Score Matching},
booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2019, Venice, Italy, April 8-11, 2019},
pages = {1523--1526},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ISBI.2019.8759418},
doi = {10.1109/ISBI.2019.8759418},
timestamp = {Mon, 15 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalYGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/MeijeringM18,
author = {Erik Meijering and
Arrate Mu{\~{n}}oz{-}Barrutia},
title = {Spotlight on Bioimaging and Signal Processing [In the Spotlight]},
journal = {{IEEE} Signal Process. Mag.},
volume = {35},
number = {6},
pages = {128--125},
year = {2018},
url = {https://doi.org/10.1109/MSP.2018.2864772},
doi = {10.1109/MSP.2018.2864772},
timestamp = {Sat, 01 Dec 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/MeijeringM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CastillaMSMO18,
author = {Carlos Castilla and
Martin Maska and
Dmitry V. Sorokin and
Erik Meijering and
Carlos Ortiz{-}de{-}Solorzano},
title = {Segmentation of actin-stained 3D fluorescent cells with filopodial
protrusions using convolutional neural networks},
booktitle = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2018, Washington, DC, USA, April 4-7, 2018},
pages = {413--417},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ISBI.2018.8363605},
doi = {10.1109/ISBI.2018.8363605},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/CastillaMSMO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/YaoSM18,
author = {Yao Yao and
Ihor Smal and
Erik Meijering},
title = {Deep neural networks for data association in particle tracking},
booktitle = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2018, Washington, DC, USA, April 4-7, 2018},
pages = {458--461},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ISBI.2018.8363615},
doi = {10.1109/ISBI.2018.8363615},
timestamp = {Wed, 30 May 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/YaoSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalGM18,
author = {Ihor Smal and
Niels Galjart and
Erik Meijering},
title = {Accurate estimation of intracellular dynamics and underlying spatial
structures using hierarchical trajectory smoothing},
booktitle = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2018, Washington, DC, USA, April 4-7, 2018},
pages = {973--976},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ISBI.2018.8363733},
doi = {10.1109/ISBI.2018.8363733},
timestamp = {Wed, 30 May 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RadojevicM17,
author = {Miroslav Radojevic and
Erik Meijering},
title = {Automated neuron tracing using probability hypothesis density filtering},
journal = {Bioinform.},
volume = {33},
number = {7},
pages = {1073--1080},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw751},
doi = {10.1093/BIOINFORMATICS/BTW751},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RadojevicM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RadojevicM17,
author = {Miroslav Radojevic and
Erik Meijering},
title = {Neuron reconstruction from fluorescence microscopy images using sequential
Monte Carlo estimation},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {36--39},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950462},
doi = {10.1109/ISBI.2017.7950462},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RadojevicM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalBSGM17,
author = {Ihor Smal and
Sreya Basu and
Laura Sayas and
Niels Galjart and
Erik Meijering},
title = {Gaussian processes for trajectory analysis in microtubule tracking
applications},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {206--209},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950502},
doi = {10.1109/ISBI.2017.7950502},
timestamp = {Fri, 23 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalBSGM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/RadojevicSM16,
author = {Miroslav Radojevic and
Ihor Smal and
Erik Meijering},
title = {Fuzzy-Logic Based Detection and Characterization of Junctions and
Terminations in Fluorescence Microscopy Images of Neurons},
journal = {Neuroinformatics},
volume = {14},
number = {2},
pages = {201--219},
year = {2016},
url = {https://doi.org/10.1007/s12021-015-9287-0},
doi = {10.1007/S12021-015-9287-0},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/RadojevicSM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/SmalM16,
author = {Ihor Smal and
Erik Meijering},
editor = {Gang Hua and
Herv{\'{e}} J{\'{e}}gou},
title = {Poisson Point Processes for Solving Stochastic Inverse Problems in
Fluorescence Microscopy},
booktitle = {Computer Vision - {ECCV} 2016 Workshops - Amsterdam, The Netherlands,
October 8-10 and 15-16, 2016, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {9913},
pages = {326--338},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46604-0\_24},
doi = {10.1007/978-3-319-46604-0\_24},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/eccv/SmalM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MataRSMMR16,
author = {Gadea Mata and
Miroslav Radojevic and
Ihor Smal and
Miguel Morales and
Erik Meijering and
Julio Rubio},
title = {Automatic detection of neurons in high-content microscope images using
machine learning approaches},
booktitle = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2016, Prague, Czech Republic, April 13-16, 2016},
pages = {330--333},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/ISBI.2016.7493276},
doi = {10.1109/ISBI.2016.7493276},
timestamp = {Tue, 17 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/MataRSMMR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SmalM15,
author = {Ihor Smal and
Erik Meijering},
title = {Quantitative comparison of multiframe data association techniques
for particle tracking in time-lapse fluorescence microscopy},
journal = {Medical Image Anal.},
volume = {24},
number = {1},
pages = {163--189},
year = {2015},
url = {https://doi.org/10.1016/j.media.2015.06.006},
doi = {10.1016/J.MEDIA.2015.06.006},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/SmalM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/PengMA15,
author = {Hanchuan Peng and
Erik Meijering and
Giorgio A. Ascoli},
title = {From {DIADEM} to BigNeuron},
journal = {Neuroinformatics},
volume = {13},
number = {3},
pages = {259--260},
year = {2015},
url = {https://doi.org/10.1007/s12021-015-9270-9},
doi = {10.1007/S12021-015-9270-9},
timestamp = {Thu, 01 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/PengMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/Munoz-BarrutiaKKMP15,
author = {Arrate Mu{\~{n}}oz{-}Barrutia and
Jelena Kovacevic and
Michal Kozubek and
Erik Meijering and
Braham Parvin},
title = {Quantitative Bioimaging: Signal Processing in Light Microscopy [From
the Guest Editors]},
journal = {{IEEE} Signal Process. Mag.},
volume = {32},
number = {1},
pages = {18--19},
year = {2015},
url = {https://doi.org/10.1109/MSP.2014.2359691},
doi = {10.1109/MSP.2014.2359691},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/Munoz-BarrutiaKKMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/Ortiz-de-SolorzanoMMK15,
author = {Carlos Ortiz{-}de{-}Solorzano and
Arrate Mu{\~{n}}oz{-}Barrutia and
Erik Meijering and
Michal Kozubek},
title = {Toward a Morphodynamic Model of the Cell: Signal processing for cell
modeling},
journal = {{IEEE} Signal Process. Mag.},
volume = {32},
number = {1},
pages = {20--29},
year = {2015},
url = {https://doi.org/10.1109/MSP.2014.2358263},
doi = {10.1109/MSP.2014.2358263},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/Ortiz-de-SolorzanoMMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/Meijering15,
author = {Erik Meijering},
editor = {Alberto Cliquet Junior and
Ana L. N. Fred and
Hugo Gamboa and
Dirk Elias},
title = {Advances and Challenges in Dynamic Bioimage Analysis},
booktitle = {{BIODEVICES} 2015 - Proceedings of the International Conference on
Biomedical Electronics and Devices, Lisbon, Portugal, 12-15 January,
2015},
pages = {IS--5},
publisher = {SciTePress},
year = {2015},
timestamp = {Mon, 01 Apr 2024 00:12:17 +0200},
biburl = {https://dblp.org/rec/conf/biostec/Meijering15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RadojevieSM15,
author = {Miroslav Radojevic and
Ihor Smal and
Erik Meijering},
title = {Automated neuron morphology reconstruction using fuzzy-logic detection
and Bayesian tracing algorithms},
booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2015, Brooklyn, NY, USA, April 16-19, 2015},
pages = {885--888},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ISBI.2015.7164012},
doi = {10.1109/ISBI.2015.7164012},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RadojevieSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaskaUSMMEUEVBKBSCCHRMJBDKHPJLMMKO14,
author = {Martin Maska and
Vladim{\'{\i}}r Ulman and
David Svoboda and
Pavel Matula and
Petr Matula and
Cristina Ederra and
Ainhoa Urbiola and
Tom{\'{a}}s Espa{\~{n}}a and
Subramanian Venkatesan and
Deepak M. W. Balak and
Pavel Karas and
Tereza Bolckov{\'{a}} and
Mark{\'{e}}ta Streitov{\'{a}} and
Craig Carthel and
Stefano Coraluppi and
Nathalie Harder and
Karl Rohr and
Klas E. G. Magnusson and
Joakim Jald{\'{e}}n and
Helen M. Blau and
Oleh Dzyubachyk and
Pavel Kr{\'{\i}}zek and
Guy M. Hagen and
David Pastor{-}Escuredo and
Daniel Jimenez{-}Carretero and
Mar{\'{\i}}a J. Ledesma{-}Carbayo and
Arrate Mu{\~{n}}oz{-}Barrutia and
Erik Meijering and
Michal Kozubek and
Carlos Ortiz{-}de{-}Solorzano},
title = {A benchmark for comparison of cell tracking algorithms},
journal = {Bioinform.},
volume = {30},
number = {11},
pages = {1609--1617},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu080},
doi = {10.1093/BIOINFORMATICS/BTU080},
timestamp = {Tue, 07 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaskaUSMMEUEVBKBSCCHRMJBDKHPJLMMKO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/DemirelSNMS14,
author = {{\"{O}}mer Demirel and
Ihor Smal and
Wiro J. Niessen and
Erik Meijering and
Ivo F. Sbalzarini},
title = {An adaptive distributed resampling algorithm with non-proportional
allocation},
booktitle = {{IEEE} International Conference on Acoustics, Speech and Signal Processing,
{ICASSP} 2014, Florence, Italy, May 4-9, 2014},
pages = {1635--1639},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/ICASSP.2014.6853875},
doi = {10.1109/ICASSP.2014.6853875},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icassp/DemirelSNMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RadojevieSNM14,
author = {Miroslav Radojevic and
Ihor Smal and
Wiro J. Niessen and
Erik Meijering},
title = {Fuzzy logic based detection of neuron bifurcations in microscopy images},
booktitle = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI}
2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China},
pages = {1307--1310},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/ISBI.2014.6868117},
doi = {10.1109/ISBI.2014.6868117},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RadojevieSNM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/PlengePNM13,
author = {Esben Plenge and
Dirk H. J. Poot and
Wiro J. Niessen and
Erik Meijering},
editor = {Kensaku Mori and
Ichiro Sakuma and
Yoshinobu Sato and
Christian Barillot and
Nassir Navab},
title = {Super-Resolution Reconstruction Using Cross-Scale Self-similarity
in Multi-slice {MRI}},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2013 - 16th International Conference, Nagoya, Japan, September 22-26,
2013, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {8151},
pages = {123--130},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40760-4\_16},
doi = {10.1007/978-3-642-40760-4\_16},
timestamp = {Sun, 02 Jun 2019 21:24:51 +0200},
biburl = {https://dblp.org/rec/conf/miccai/PlengePNM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DemirelSNMS13,
author = {{\"{O}}mer Demirel and
Ihor Smal and
Wiro J. Niessen and
Erik Meijering and
Ivo F. Sbalzarini},
title = {{PPF} - {A} Parallel Particle Filtering Library},
journal = {CoRR},
volume = {abs/1310.5045},
year = {2013},
url = {http://arxiv.org/abs/1310.5045},
eprinttype = {arXiv},
eprint = {1310.5045},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/DemirelSNMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DemirelSNMS13a,
author = {{\"{O}}mer Demirel and
Ihor Smal and
Wiro J. Niessen and
Erik Meijering and
Ivo F. Sbalzarini},
title = {Piecewise Constant Sequential Importance Sampling for Fast Particle
Filtering},
journal = {CoRR},
volume = {abs/1310.5541},
year = {2013},
url = {http://arxiv.org/abs/1310.5541},
eprinttype = {arXiv},
eprint = {1310.5541},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/DemirelSNMS13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SmalCKWMSBNM12,
author = {Ihor Smal and
Noem{\'{\i}} Carranza{-}Herrezuelo and
Stefan Klein and
Piotr Wielopolski and
Adriaan Moelker and
Tirza Springeling and
Monique Bernsen and
Wiro J. Niessen and
Erik Meijering},
title = {Reversible jump {MCMC} methods for fully automatic motion analysis
in tagged {MRI}},
journal = {Medical Image Anal.},
volume = {16},
number = {1},
pages = {301--324},
year = {2012},
url = {https://doi.org/10.1016/j.media.2011.08.006},
doi = {10.1016/J.MEDIA.2011.08.006},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/SmalCKWMSBNM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/Meijering12,
author = {Erik Meijering},
title = {Cell Segmentation: 50 Years Down the Road [Life Sciences]},
journal = {{IEEE} Signal Process. Mag.},
volume = {29},
number = {5},
pages = {140--145},
year = {2012},
url = {https://doi.org/10.1109/MSP.2012.2204190},
doi = {10.1109/MSP.2012.2204190},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spm/Meijering12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/KhmelinskiiPKDPSBNWML12,
author = {Artem Khmelinskii and
Esben Plenge and
Peter Kok and
Oleh Dzyubachyk and
Dirk H. J. Poot and
E. Suidgeest and
Charl P. Botha and
Wiro J. Niessen and
Louise van der Weerd and
Erik Meijering and
Boudewijn P. F. Lelieveldt},
title = {Super-resolution reconstruction of whole-body {MRI} mouse data: An
interactive approach},
booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
pages = {1723--1726},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISBI.2012.6235912},
doi = {10.1109/ISBI.2012.6235912},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/isbi/KhmelinskiiPKDPSBNWML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/Meijering12,
author = {Erik Meijering},
title = {Reconstruction and quantification of neuronal morphology},
booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
pages = {1787},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISBI.2012.6235928},
doi = {10.1109/ISBI.2012.6235928},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/Meijering12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/PlengePBKHWWNM12,
author = {Esben Plenge and
Dirk H. J. Poot and
Monique Bernsen and
Gyula Kotek and
Gavin Houston and
Piotr Wielopolski and
Louise van der Weerd and
Wiro J. Niessen and
Erik Meijering},
editor = {David R. Haynor and
S{\'{e}}bastien Ourselin},
title = {Super-resolution in {MRI:} better images faster?},
booktitle = {Medical Imaging 2012: Image Processing, San Diego, California, USA,
February 4, 2012},
series = {{SPIE} Proceedings},
volume = {8314},
pages = {83143V},
publisher = {{SPIE}},
year = {2012},
url = {https://doi.org/10.1117/12.911235},
doi = {10.1117/12.911235},
timestamp = {Wed, 27 Nov 2024 12:16:09 +0100},
biburl = {https://dblp.org/rec/conf/miip/PlengePBKHWWNM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalCKNM11,
author = {Ihor Smal and
Noem{\'{\i}} Carranza{-}Herrezuelo and
Stefan Klein and
Wiro J. Niessen and
Erik Meijering},
title = {Quantitative comparison of tracking methods for motion analysis in
tagged {MRI}},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {345--348},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872420},
doi = {10.1109/ISBI.2011.5872420},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalCKNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CarranzaSDNM11,
author = {Noem{\'{\i}} Carranza{-}Herrezuelo and
Ihor Smal and
Oleh Dzyubachyk and
Wiro J. Niessen and
Erik Meijering},
title = {Automated lineage tree reconstruction from Caenorhabditis elegans
image data using particle filtering based cell tracking},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {1921--1924},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872785},
doi = {10.1109/ISBI.2011.5872785},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/CarranzaSDNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SmalCKNM11,
author = {Ihor Smal and
Noem{\'{\i}} Carranza{-}Herrezuelo and
Stefan Klein and
Wiro J. Niessen and
Erik Meijering},
editor = {Gabor Fichtinger and
Anne L. Martel and
Terry M. Peters},
title = {Trans-Dimensional {MCMC} Methods for Fully Automatic Motion Analysis
in Tagged {MRI}},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2011 - 14th International Conference, Toronto, Canada, September 18-22,
2011, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {6891},
pages = {573--580},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23623-5\_72},
doi = {10.1007/978-3-642-23623-5\_72},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SmalCKNM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DzyubachykECBINM10,
author = {Oleh Dzyubachyk and
Jeroen Essers and
Wiggert A. van Cappellen and
C{\'{e}}line Baldeyron and
Akiko Inagaki and
Wiro J. Niessen and
Erik Meijering},
title = {Automated analysis of time-lapse fluorescence microscopy images: from
live cell images to intracellular foci},
journal = {Bioinform.},
volume = {26},
number = {19},
pages = {2424--2430},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq434},
doi = {10.1093/BIOINFORMATICS/BTQ434},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DzyubachykECBINM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/SmalGANM10,
author = {Ihor Smal and
Ilya Grigoriev and
Anna Akhmanova and
Wiro J. Niessen and
Erik Meijering},
title = {Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle
Filters},
journal = {{IEEE} Trans. Image Process.},
volume = {19},
number = {7},
pages = {1861--1876},
year = {2010},
url = {https://doi.org/10.1109/TIP.2010.2045031},
doi = {10.1109/TIP.2010.2045031},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tip/SmalGANM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SmalLNM10,
author = {Ihor Smal and
Marco Loog and
Wiro J. Niessen and
Erik Meijering},
title = {Quantitative Comparison of Spot Detection Methods in Fluorescence
Microscopy},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {2},
pages = {282--301},
year = {2010},
url = {https://doi.org/10.1109/TMI.2009.2025127},
doi = {10.1109/TMI.2009.2025127},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/SmalLNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DzyubachykCENM10,
author = {Oleh Dzyubachyk and
Wiggert A. van Cappellen and
Jeroen Essers and
Wiro J. Niessen and
Erik Meijering},
title = {Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence
Microscopy},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {3},
pages = {852--867},
year = {2010},
url = {https://doi.org/10.1109/TMI.2009.2038693},
doi = {10.1109/TMI.2009.2038693},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/DzyubachykCENM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DzyubachykCENM10a,
author = {Oleh Dzyubachyk and
Wiggert A. van Cappellen and
Jeroen Essers and
Wiro J. Niessen and
Erik Meijering},
title = {Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse
Fluorescence Microscopy"},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {6},
pages = {1331},
year = {2010},
url = {https://doi.org/10.1109/TMI.2010.2049183},
doi = {10.1109/TMI.2010.2049183},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/DzyubachykCENM10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalNM10,
author = {Ihor Smal and
Wiro J. Niessen and
Erik Meijering},
title = {Particle filtering methods for motion analysis in tagged {MRI}},
booktitle = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
2010},
pages = {488--491},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/ISBI.2010.5490302},
doi = {10.1109/ISBI.2010.5490302},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalNM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DzyubachykCENM09,
author = {Oleh Dzyubachyk and
Wiggert A. van Cappellen and
Jeroen Essers and
Wiro J. Niessen and
Erik Meijering},
title = {Energy Minimization Methods for Cell Motion Correction and Intracellular
Analysis in Live-Cell Fluorescence Microscopy},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {1127--1130},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193255},
doi = {10.1109/ISBI.2009.5193255},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/DzyubachykCENM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalLNM09,
author = {Ihor Smal and
Marco Loog and
Wiro J. Niessen and
Erik Meijering},
title = {Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence
Microscopy Imaging},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {1175--1178},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193268},
doi = {10.1109/ISBI.2009.5193268},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalLNM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SmalMDGGARHN08,
author = {Ihor Smal and
Erik Meijering and
Katharina Draegestein and
Niels Galjart and
Ilya Grigoriev and
Anna Akhmanova and
M. E. van Royen and
Adriaan B. Houtsmuller and
Wiro J. Niessen},
title = {Multiple object tracking in molecular bioimaging by Rao-Blackwellized
marginal particle filtering},
journal = {Medical Image Anal.},
volume = {12},
number = {6},
pages = {764--777},
year = {2008},
url = {https://doi.org/10.1016/j.media.2008.03.004},
doi = {10.1016/J.MEDIA.2008.03.004},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/SmalMDGGARHN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SmalDGNM08,
author = {Ihor Smal and
Katharina Draegestein and
Niels Galjart and
Wiro J. Niessen and
Erik Meijering},
title = {Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence
Microscopy Images: Application to Microtubule Growth Analysis},
journal = {{IEEE} Trans. Medical Imaging},
volume = {27},
number = {6},
pages = {789--804},
year = {2008},
url = {https://doi.org/10.1109/TMI.2008.916964},
doi = {10.1109/TMI.2008.916964},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/SmalDGNM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DzyubachykNM08,
author = {Oleh Dzyubachyk and
Wiro J. Niessen and
Erik Meijering},
title = {Advanced level-set based multiple-cell segmentation and tracking in
time-lapse fluorescence microscopy images},
booktitle = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Paris, France, May 14-17, 2008},
pages = {185--188},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/ISBI.2008.4540963},
doi = {10.1109/ISBI.2008.4540963},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/DzyubachykNM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalNM08,
author = {Ihor Smal and
Wiro J. Niessen and
Erik Meijering},
title = {A new detection scheme for multiple object tracking in fluorescence
microscopy by joint probabilistic data association filtering},
booktitle = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Paris, France, May 14-17, 2008},
pages = {264--267},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/ISBI.2008.4540983},
doi = {10.1109/ISBI.2008.4540983},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalNM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/SmalDGNM07,
author = {Ihor Smal and
Katharina Draegestein and
Niels Galjart and
Wiro J. Niessen and
Erik Meijering},
editor = {Nico Karssemeijer and
Boudewijn P. F. Lelieveldt},
title = {Rao-Blackwellized Marginal Particle Filtering for Multiple Object
Tracking in Molecular Bioimaging},
booktitle = {Information Processing in Medical Imaging, 20th International Conference,
{IPMI} 2007, Kerkrade, The Netherlands, July 2-6, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4584},
pages = {110--121},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73273-0\_10},
doi = {10.1007/978-3-540-73273-0\_10},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/SmalDGNM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DzyubachykNM07,
author = {Oleh Dzyubachyk and
Wiro J. Niessen and
Erik Meijering},
title = {A Variational Model for Level-set Based Cell Tracking in Time-lapse
Fluorescence Microscopy Images},
booktitle = {Proceedings of the 2007 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007},
pages = {97--100},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/ISBI.2007.356797},
doi = {10.1109/ISBI.2007.356797},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/DzyubachykNM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalNM07,
author = {Ihor Smal and
Wiro J. Niessen and
Erik Meijering},
title = {Advanced Particle Filtering for Multiple Object Tracking in Dynamic
Fluorescence Microscopy Images},
booktitle = {Proceedings of the 2007 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007},
pages = {1048--1051},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/ISBI.2007.357035},
doi = {10.1109/ISBI.2007.357035},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalNM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/MeijeringSD06,
author = {Erik Meijering and
Ihor Smal and
Gaudenz Danuser},
title = {Tracking in molecular bioimaging},
journal = {{IEEE} Signal Process. Mag.},
volume = {23},
number = {3},
pages = {46--53},
year = {2006},
url = {https://doi.org/10.1109/MSP.2006.1628877},
doi = {10.1109/MSP.2006.1628877},
timestamp = {Wed, 24 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spm/MeijeringSD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SmalNM06,
author = {Ihor Smal and
Wiro J. Niessen and
Erik Meijering},
title = {Bayesian tracking for fluorescence microscopic imaging},
booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006},
pages = {550--553},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/ISBI.2006.1624975},
doi = {10.1109/ISBI.2006.1624975},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SmalNM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/MurphyMD05,
author = {R. Murphy and
Erik Meijering and
Gaudenz Danuser},
title = {Guest Editorial},
journal = {{IEEE} Trans. Image Process.},
volume = {14},
number = {9},
pages = {1233--1236},
year = {2005},
url = {https://doi.org/10.1109/TIP.2005.855701},
doi = {10.1109/TIP.2005.855701},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/MurphyMD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MeijeringJSSHU04,
author = {Erik Meijering and
Mathews Jacob and
J.{-}C. Floyd Sarria and
Pascal Steiner and
Harald Hirling and
Michael Unser},
title = {Neurite Tracing in Fluorescence Microscopy Images using Ridge Filtering
and Graph Searching: Principles and Validation},
booktitle = {Proceedings of the 2004 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Arlington, VA, USA, 15-18 April 2004},
pages = {1219--1222},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/ISBI.2004.1398764},
doi = {10.1109/ISBI.2004.1398764},
timestamp = {Wed, 04 Oct 2023 16:23:55 +0200},
biburl = {https://dblp.org/rec/conf/isbi/MeijeringJSSHU04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AndlMLVS04,
author = {Hugo A. F. Gratama van Andel and
Erik Meijering and
Aad van der Lugt and
Henri A. Vrooman and
Rik Stokking},
editor = {Christian Barillot and
David R. Haynor and
Pierre Hellier},
title = {{VAMPIRE:} Improved Method for Automated Center Lumen Line Definition
in Atherosclerotic Carotid Arteries in {CTA} Data},
booktitle = {Medical Image Computing and Computer-Assisted Intervention -- {MICCAI}
2004, 7th International Conference Saint-Malo, France, September 26-29,
2004, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {3216},
pages = {525--532},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30135-6\_64},
doi = {10.1007/978-3-540-30135-6\_64},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/AndlMLVS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/MeijeringU03,
author = {Erik Meijering and
Michael Unser},
title = {A note on cubic convolution interpolation},
journal = {{IEEE} Trans. Image Process.},
volume = {12},
number = {4},
pages = {477--479},
year = {2003},
url = {https://doi.org/10.1109/TIP.2003.811493},
doi = {10.1109/TIP.2003.811493},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tip/MeijeringU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sip/MeijeringJSU03,
author = {Erik Meijering and
Mathews Jacob and
J.{-}C. Floyd Sarria and
Michael Unser},
editor = {M. H. Hamza},
title = {A Novel Approach to Neurite Tracing in Fluorescence Microscopy Images},
booktitle = {Signal and Image Processing {(SIP} 2003), Proceedings of the {IASTED}
International Conference, August 13-15, 2003, Honolulu, HI, {USA}},
pages = {491--495},
publisher = {{IASTED/ACTA} Press},
year = {2003},
url = {http://www.actapress.com/Abstract.aspx?paperId=15743},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sip/MeijeringJSU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/MeijeringNWV02,
author = {Erik Meijering and
Wiro J. Niessen and
Joachim Weickert and
Max A. Viergever},
title = {Diffusion-enhanced visualization and quantification of vascular anomalies
in three-dimensional rotational angiography: Results of an in-vitro
evaluation},
journal = {Medical Image Anal.},
volume = {6},
number = {3},
pages = {215--233},
year = {2002},
url = {https://doi.org/10.1016/S1361-8415(02)00081-6},
doi = {10.1016/S1361-8415(02)00081-6},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/MeijeringNWV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/MeijeringF02,
author = {Erik Meijering and
Howard Falk},
title = {Prolog to a chronology of interpolation: from ancient astronomy to
modern signal and image processing},
journal = {Proc. {IEEE}},
volume = {90},
number = {3},
pages = {317--318},
year = {2002},
url = {https://doi.org/10.1109/JPROC.2002.993399},
doi = {10.1109/JPROC.2002.993399},
timestamp = {Tue, 17 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/MeijeringF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/Meijering02,
author = {Erik Meijering},
title = {A chronology of interpolation: from ancient astronomy to modern signal
and image processing},
journal = {Proc. {IEEE}},
volume = {90},
number = {3},
pages = {319--342},
year = {2002},
url = {https://doi.org/10.1109/5.993400},
doi = {10.1109/5.993400},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pieee/Meijering02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/MeijeringNV01,
author = {Erik H. W. Meijering and
Wiro J. Niessen and
Max A. Viergever},
title = {Quantitative evaluation of convolution-based methods for medical image
interpolation},
journal = {Medical Image Anal.},
volume = {5},
number = {2},
pages = {111--126},
year = {2001},
url = {https://doi.org/10.1016/S1361-8415(00)00040-2},
doi = {10.1016/S1361-8415(00)00040-2},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/MeijeringNV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeijeringNWV01,
author = {Erik Meijering and
Wiro J. Niessen and
Joachim Weickert and
Max A. Viergever},
editor = {Wiro J. Niessen and
Max A. Viergever},
title = {Evaluation of Diffusion Techniques for Improved Vessel Visualization
and Quantification in Three-Dimensional Rotational Angiography},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2001, 4th International Conference, Utrecht, The Netherlands, October
14-17, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2208},
pages = {177--185},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45468-3\_22},
doi = {10.1007/3-540-45468-3\_22},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeijeringNWV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/Meijering00,
author = {Erik H. W. Meijering},
title = {Spline interpolation in medical imaging: Comparison with other convolution-based
approaches},
booktitle = {10th European Signal Processing Conference, {EUSIPCO} 2000, Tampere,
Finland, September 4-8, 2000},
pages = {1--8},
publisher = {{IEEE}},
year = {2000},
url = {https://ieeexplore.ieee.org/document/7075214/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/Meijering00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BaertNMFV00,
author = {Shirley A. M. Baert and
Wiro J. Niessen and
Erik H. W. Meijering and
Alejandro F. Frangi and
Max A. Viergever},
editor = {Scott L. Delp and
Anthony M. DiGioia and
Branislav Jaramaz},
title = {Guide Wire Tracking During Endovascular Interventions},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2000, Third International Conference, Pittsburgh, Pennsylvania, USA,
October 11-14, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1935},
pages = {727--734},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/978-3-540-40899-4\_75},
doi = {10.1007/978-3-540-40899-4\_75},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BaertNMFV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcv/MeijeringZV99,
author = {Erik H. W. Meijering and
Karel J. Zuiderveld and
Max A. Viergever},
title = {Image Registration for Digital Subtraction Angiography},
journal = {Int. J. Comput. Vis.},
volume = {31},
number = {2-3},
pages = {227--246},
year = {1999},
url = {https://doi.org/10.1023/A:1008074100927},
doi = {10.1023/A:1008074100927},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcv/MeijeringZV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/MeijeringZV99,
author = {Erik H. W. Meijering and
Karel J. Zuiderveld and
Max A. Viergever},
title = {Image reconstruction by convolution with symmetrical piecewise nth-order
polynomial kernels},
journal = {{IEEE} Trans. Image Process.},
volume = {8},
number = {2},
pages = {192--201},
year = {1999},
url = {https://doi.org/10.1109/83.743854},
doi = {10.1109/83.743854},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/MeijeringZV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MeijeringNV99,
author = {Erik H. W. Meijering and
Wiro J. Niessen and
Max A. Viergever},
title = {Retrospective Motion Correction in Digital Subtraction Angiography:
{A} Review},
journal = {{IEEE} Trans. Medical Imaging},
volume = {18},
number = {18},
pages = {2--21},
year = {1999},
url = {https://doi.org/10.1109/42.750248},
doi = {10.1109/42.750248},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/MeijeringNV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/MeijeringZNV99,
author = {Erik H. W. Meijering and
Karel J. Zuiderveld and
Wiro J. Niessen and
Max A. Viergever},
title = {A Fast Image Registration Technique for Motion Artifact Reduction
in {DSA}},
booktitle = {Proceedings of the 1999 International Conference on Image Processing,
{ICIP} '99, Kobe, Japan, October 24-28, 1999},
pages = {435--439},
publisher = {{IEEE}},
year = {1999},
url = {https://doi.org/10.1109/ICIP.1999.817151},
doi = {10.1109/ICIP.1999.817151},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icip/MeijeringZNV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/MeijeringNV99,
author = {Erik H. W. Meijering and
Wiro J. Niessen and
Max A. Viergever},
title = {Piecewise Polynomial Kernels for Image Interpolation: {A} Generalization
of Cubic Convolution},
booktitle = {Proceedings of the 1999 International Conference on Image Processing,
{ICIP} '99, Kobe, Japan, October 24-28, 1999},
pages = {647--651},
publisher = {{IEEE}},
year = {1999},
timestamp = {Thu, 02 Feb 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icip/MeijeringNV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/MeqeringNV99,
author = {Erik H. W. Meijering and
Wiro J. Niessen and
Max A. Viergever},
title = {The Sinc-Approximating Kernels of Classical Polynomial Interpolation},
booktitle = {Proceedings of the 1999 International Conference on Image Processing,
{ICIP} '99, Kobe, Japan, October 24-28, 1999},
pages = {652--656},
publisher = {{IEEE}},
year = {1999},
url = {https://doi.org/10.1109/ICIP.1999.817196},
doi = {10.1109/ICIP.1999.817196},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icip/MeqeringNV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeijeringNPV99,
author = {Erik H. W. Meijering and
Wiro J. Niessen and
Josien P. W. Pluim and
Max A. Viergever},
editor = {Christopher J. Taylor and
Alan C. F. Colchester},
title = {Quantitative Comparison of Sinc-Approximating Kernels for Medical
Image Interpolation},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI'99,
Second International Conference, Cambridge, UK, September 19-22, 1999,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1679},
pages = {210--217},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/10704282\_23},
doi = {10.1007/10704282\_23},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeijeringNPV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeijeringZV98,
author = {Erik H. W. Meijering and
Karel J. Zuiderveld and
Max A. Viergever},
editor = {William M. Wells III and
Alan C. F. Colchester and
Scott L. Delp},
title = {A Fast Technique for Motion Correction in {DSA} Using a Feature-Based,
Irregular Grid},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI'98,
First International Conference, Cambridge, MA, USA, October 11-13,
1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1496},
pages = {590--597},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0056244},
doi = {10.1007/BFB0056244},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeijeringZV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/MaintzMV98,
author = {J. B. Antoine Maintz and
Erik H. W. Meijering and
Max A. Viergever},
editor = {Kenneth M. Hanson},
title = {General multimodal elastic registration based on mutual information},
booktitle = {Medical Imaging 1998: Image Processing, San Diego, CA, United States,
21-26 February 1998},
series = {{SPIE} Proceedings},
volume = {3338},
publisher = {{SPIE}},
year = {1998},
url = {https://doi.org/10.1117/12.310845},
doi = {10.1117/12.310845},
timestamp = {Wed, 27 Nov 2024 12:16:39 +0100},
biburl = {https://dblp.org/rec/conf/miip/MaintzMV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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